View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_20 (Length: 476)
Name: NF17152_low_20
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 6626258 - 6626584
Alignment:
| Q |
16 |
atgcatttatttttgtccattagaggcagatcaccaagaatttcttgaaattttcatcaatcagagattagtgttactaaattgacaaatctaaaataac |
115 |
Q |
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| T |
6626258 |
atgcatttatttttgtccattagaggtaga---ccaagaatttcttgaaattttcatcaatcagagattagtgttactaaattgataaatctaaaagaac |
6626354 |
T |
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| Q |
116 |
aagtaatatttgtttaattaaaacaaatacat-------------gcatcatagtcatcatatcaagagcaaaaaaattgtctaagcaaaaaggattaag |
202 |
Q |
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| T |
6626355 |
aagtaatatttgtttaattaaaacaaatccatatttaatattcatgcatcatagtcatcatatcaagagcaaaaaaattgtctaagcaaaaaggattaag |
6626454 |
T |
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| Q |
203 |
catnnnnnnnntgattggaaaatcccatgggttacctcccatgcaactttgcttttacgtctttaacttgaagattgatggcatcatggttcgtttagaa |
302 |
Q |
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| T |
6626455 |
cataaaaaaa-tgattggaaaatcccatgggttacctcccatgcaactttgcttttacgtctttaacttgaagattgatggcatcatggttcgtttagaa |
6626553 |
T |
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| Q |
303 |
ccggtgacactctctcggttttaaccgttga |
333 |
Q |
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| T |
6626554 |
ccggtgacactctctcggttttaaccgttga |
6626584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 6795009 - 6795204
Alignment:
| Q |
20 |
atttatttttgtccattagaggcagatcaccaagaatttcttgaaattttcatcaatcagagattagtgttactaaattgacaaatctaaaataacaagt |
119 |
Q |
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| T |
6795009 |
atttatttttgtccattagaggtaga---ccaagaaattcttgaaattttcatcaatcagagattagtgttactaaattgacaaatctaaaataacaagt |
6795105 |
T |
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| Q |
120 |
aatatttgtttaattaaaacaa-------------atacatgcatcatagtcatcatatcaagagcaaaaaaattgtctaagcaaaaaggattaagcat |
205 |
Q |
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| T |
6795106 |
aatatttgtttaattaaaacaaatccatatttaatattcatgcatcatagtcatcttatcaagagcaaaaaaattgtctaagcaaaaatgattaagcat |
6795204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 330 - 476
Target Start/End: Original strand, 6627068 - 6627219
Alignment:
| Q |
330 |
ttgaatgtaattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctgtgcaatttgacatgtaattacatgac----- |
424 |
Q |
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| T |
6627068 |
ttgaatataattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctctgcaatttgacatgtaattacatgactgttt |
6627167 |
T |
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| Q |
425 |
tgttttgctccgtgcaatgtaaaaagagacatgttagttttccattgagtac |
476 |
Q |
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| T |
6627168 |
tgttttgctccgtgcaatgtaaaaagagacatgttaggtttccattgagtac |
6627219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 330 - 476
Target Start/End: Original strand, 6634867 - 6635018
Alignment:
| Q |
330 |
ttgaatgtaattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctgtgcaatttgacatgtaattacatgac----- |
424 |
Q |
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| T |
6634867 |
ttgaatataattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctctgcaatttgacatgtaattacatgactgttt |
6634966 |
T |
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| Q |
425 |
tgttttgctccgtgcaatgtaaaaagagacatgttagttttccattgagtac |
476 |
Q |
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| T |
6634967 |
tgttttgctccgtgcaatgtaaaaagagacatgttaggtttccattgagtac |
6635018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 6634528 - 6634581
Alignment:
| Q |
152 |
catagtcatcatatcaagagcaaaaaaattgtctaagcaaaaaggattaagcat |
205 |
Q |
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| T |
6634528 |
catagtcatcatatcaagagcaaaaaaattgtctaaacaaaaaggattaagcat |
6634581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 6634589 - 6634626
Alignment:
| Q |
252 |
tgcttttacgtctttaacttgaagattgatggcatcat |
289 |
Q |
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| T |
6634589 |
tgcttttacgtctttaacttgaagcttgatggcatcat |
6634626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 6795215 - 6795249
Alignment:
| Q |
255 |
ttttacgtctttaacttgaagattgatggcatcat |
289 |
Q |
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| T |
6795215 |
ttttacgtctttaacttgaagcttgatggcatcat |
6795249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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