View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_22 (Length: 462)
Name: NF17152_low_22
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 39571668 - 39571235
Alignment:
| Q |
14 |
agacaaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttga |
113 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
39571668 |
agacaaagaaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaagcacaaaacatggagttaaaaaaatggttga |
39571569 |
T |
|
| Q |
114 |
aaatggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39571568 |
aaatggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagat |
39571469 |
T |
|
| Q |
214 |
ggagaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39571468 |
ggagaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatata |
39571369 |
T |
|
| Q |
314 |
tttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctgatatcaactaattagcatatcattataatga |
413 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39571368 |
tttgcattcggtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccccgatatcaactaattagcatatcattataatga |
39571269 |
T |
|
| Q |
414 |
attgaatttttgacaattataatggattgattct |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
39571268 |
attgaatttttgacaattataatggattgattct |
39571235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 39581625 - 39582004
Alignment:
| Q |
17 |
caaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttgaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| | |
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|
| T |
39581625 |
caaaggaagatatgggggtcacaacttattgggaaatttgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaaga |
39581724 |
T |
|
| Q |
117 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
216 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
39581725 |
tggatttggtgagtggaagtgattacaaagagggtatgttcacaacaccagaagtggaagtggagattaaaataaaagtagcttcagtttctgagatgga |
39581824 |
T |
|
| Q |
217 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||| | || ||||| |||||||||||| |
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|
| T |
39581825 |
gacgcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgcagaagattgtgatatattt |
39581924 |
T |
|
| Q |
317 |
gcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctgatatcaactaatta |
396 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | |||||||||||| |
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|
| T |
39581925 |
gcgcttggtgcagctttggaggctttttgattttgatgcaaaattatgtgatgtatatatgcactaacatcaactaatta |
39582004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 39585254 - 39585654
Alignment:
| Q |
7 |
ggagcagagacaaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnn |
106 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
39585254 |
ggagctgaggcaaaggaagatgtgggggtcacaacttattgggaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaa |
39585353 |
T |
|
| Q |
107 |
tggttgaaaatggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttg |
206 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |||| |
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|
| T |
39585354 |
tggttgaaaatggaatttgtgagtggaagtgattgcaaagagggtatgttcacaacaacagaagtggaagtggagattaaaataaaagttccttcggttg |
39585453 |
T |
|
| Q |
207 |
ttgagatggagaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatg |
306 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| || |
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|
| T |
39585454 |
ctgagatggagaacaaaaataaatggagattgaataactggaatgagtgtggatgcaaaaatggtcataatcatcaagcatggtgcaacactgaagattg |
39585553 |
T |
|
| Q |
307 |
tgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctgatatcaactaattagcatatcatt |
406 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||| |||||||||||| || | |||||||||||||| ||| ||| |
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|
| T |
39585554 |
tgatatatttgcattaggtggagctttggaggctttttgatttggatgcaaaattatgtgatgtatatatgcactaacatcaactaattagcttataatt |
39585653 |
T |
|
| Q |
407 |
a |
407 |
Q |
| |
|
| |
|
|
| T |
39585654 |
a |
39585654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 39575064 - 39575425
Alignment:
| Q |
17 |
caaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttgaaaa |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| | |
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|
| T |
39575064 |
caaaggaagatgtgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaaga |
39575163 |
T |
|
| Q |
117 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
216 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |||| || || | |||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
39575164 |
tggatttgttgagtggaagtgattgcaaagagggtatattcataacgccgtaggtggaagtggagattaaaataaaagtagcttcggttgcggagatgga |
39575263 |
T |
|
| Q |
217 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
39575264 |
gaagcaaaataagaggagattgaataattggaacaagtgtggatgtaaaaatggtcatgatcatcgagcttggtgcaacactgaagattgtgatatattt |
39575363 |
T |
|
| Q |
317 |
gcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgc |
378 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
39575364 |
gcattaggtggagctttggaggctttttgattttgatgcaaaaatatgtgatgtatatatgc |
39575425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 39566187 - 39565783
Alignment:
| Q |
17 |
caaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttgaaaa |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||| ||||||||||| |||||||||||| || ||||||||||||| |||||||| | |
|
|
| T |
39566187 |
caaaggaagatgtgggggtcacaacttattgggaaatgtgagattccatggaaagtgattcttgaatcaaaaaacatggagttaaaaaaatggttgaaga |
39566088 |
T |
|
| Q |
117 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
216 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||||||||| || |||||||||||||||||||||||||||| |||||| || |||| ||||||||| |
|
|
| T |
39566087 |
tggatttggtgagtggcagtgatttcaaagagggtatgttcataacgccagaagtggaagtggagattaaaataaaagtagcctcggttgctgagatgga |
39565988 |
T |
|
| Q |
217 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
316 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||| | || ||||| |||||||||||| |
|
|
| T |
39565987 |
gaagcaaaataacaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgcagaagagtgtgatatattt |
39565888 |
T |
|
| Q |
317 |
gcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctgatatcaactaattagcatatcattataatgaatt |
416 |
Q |
| |
|
|| || || |||||||||||||||| ||||||||||| |||||| | ||||||| || || | |||||||||||||| |||||||||||| ||| |
|
|
| T |
39565887 |
gcgtt---tggcgctttggaggctttttagttttgatgcaagattatgctacgtatataggcactaacatcaactaattagcttatcattataatagatt |
39565791 |
T |
|
| Q |
417 |
gaattttt |
424 |
Q |
| |
|
|| ||||| |
|
|
| T |
39565790 |
gatttttt |
39565783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 39568848 - 39568508
Alignment:
| Q |
17 |
caaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttgaaaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
39568848 |
caaaggaagatgtgggggtcacaacttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctaaaaaaatggttgaaaa |
39568749 |
T |
|
| Q |
117 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
216 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
39568748 |
tggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtggcttcggttgctgagatgga |
39568649 |
T |
|
| Q |
217 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
316 |
Q |
| |
|
||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||| |||||| ||||| |
|
|
| T |
39568648 |
aaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgatttattt |
39568549 |
T |
|
| Q |
317 |
gcattcagtgcagctttggaggctttttgattttgatgcaa |
357 |
Q |
| |
|
|| | |||||||||| |||||||||| |||||||||||| |
|
|
| T |
39568548 |
gcgcttggtgcagctttagaggctttttaattttgatgcaa |
39568508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 39561478 - 39561138
Alignment:
| Q |
17 |
caaaggaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaaacacaaaacatggagttnnnnnnntggttgaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| | |
|
|
| T |
39561478 |
caaaggaagatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaaga |
39561379 |
T |
|
| Q |
117 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
216 |
Q |
| |
|
| |||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||| |||| ||||||||| |
|
|
| T |
39561378 |
tatatttagtgagtggaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgagatgga |
39561279 |
T |
|
| Q |
217 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
316 |
Q |
| |
|
||| | |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
39561278 |
aaagaagaataagagaaggttgaataattggaatgagtgtggatgcaagaatggccatgatcatcacgcttggtgcagcgctgaagattgtgatatattc |
39561179 |
T |
|
| Q |
317 |
gcattcagtgcagctttggaggctttttgattttgatgcaa |
357 |
Q |
| |
|
| | | ||||||||||||||||||||||||| |||||| |
|
|
| T |
39561178 |
gtgcttggcgcagctttggaggctttttgattttaatgcaa |
39561138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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