View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_23 (Length: 459)
Name: NF17152_low_23
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_23 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 237 - 459
Target Start/End: Complemental strand, 2233485 - 2233246
Alignment:
| Q |
237 |
caaattttgacacaaacccatttgcatttcaatcaaacacaatccatccaaca---------------caaaacacaaattgtcgttcagatctaaaaag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
2233485 |
caaattttgacacaaacccatttgcatttcaatcaaacacaatcgatccaagaatcccaacaaagtaacaaaacacaaattgtcgttcagatctaaaaag |
2233386 |
T |
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| Q |
322 |
aga--taaacaacataccgtattaagagcagctaggacattattgagctgaggagaagattcaagaacacgatgaagagaacgcgtgaaaacaaaaccca |
419 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2233385 |
agagataaacaacataccgtattaagagcagctaggacattattgagctgaggagaagattcaagaacacgatgaagagaacgcgtgaaaacaaaaccca |
2233286 |
T |
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| Q |
420 |
aatcaaacggtggagaagaagaaggaaccataaagagcgt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2233285 |
aatcaaacggtggagaagaagaaggaaccataaagagcgt |
2233246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 2233626 - 2233548
Alignment:
| Q |
96 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
174 |
Q |
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| T |
2233626 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
2233548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 2233779 - 2233702
Alignment:
| Q |
7 |
aatatcaaaaatcaattctacaactctagaatcaattaactcatcataaagtgaaaccaaacatgcaccaaattatta |
84 |
Q |
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| T |
2233779 |
aatatcaaaaatcaattctacaactctagaatcaattaactcatcttaaagtgaaaccaaacatgcaccaaattatta |
2233702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 2233492 - 2233445
Alignment:
| Q |
106 |
aaaaaatcaaattttgacacaaacccattttcatttcaatcaaacaca |
153 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2233492 |
aaaatatcaaattttgacacaaacccatttgcatttcaatcaaacaca |
2233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 2233609 - 2233569
Alignment:
| Q |
237 |
caaattttgacacaaacccatttgcatttcaatcaaacaca |
277 |
Q |
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| T |
2233609 |
caaattttgacacaaacccattttcatttcaatcaaacaca |
2233569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 35995182 - 35995153
Alignment:
| Q |
14 |
aaaatcaattctacaactctagaatcaatt |
43 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35995182 |
aaaatcaattctacaactctagaatcaatt |
35995153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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