View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_24 (Length: 458)

Name: NF17152_low_24
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_24
NF17152_low_24
[»] chr1 (5 HSPs)
chr1 (16-441)||(35655315-35655740)
chr1 (348-403)||(17484566-17484621)
chr1 (273-323)||(6025983-6026033)
chr1 (348-390)||(15255159-15255201)
chr1 (348-388)||(15955969-15956009)
[»] chr5 (4 HSPs)
chr5 (348-390)||(9634889-9634931)
chr5 (348-390)||(3147089-3147131)
chr5 (367-395)||(32704479-32704507)
chr5 (271-323)||(39647140-39647192)
[»] chr7 (8 HSPs)
chr7 (348-395)||(20502777-20502824)
chr7 (349-390)||(6518103-6518144)
chr7 (348-389)||(28989946-28989987)
chr7 (359-410)||(23117280-23117331)
chr7 (348-387)||(32736045-32736084)
chr7 (354-386)||(19267779-19267811)
chr7 (354-390)||(24673365-24673401)
chr7 (361-389)||(37684215-37684243)
[»] chr8 (6 HSPs)
chr8 (348-405)||(18899923-18899980)
chr8 (273-320)||(22779552-22779599)
chr8 (364-410)||(11813998-11814044)
chr8 (360-389)||(12742460-12742489)
chr8 (357-410)||(26818185-26818238)
chr8 (270-326)||(41931045-41931101)
[»] scaffold0223 (1 HSPs)
scaffold0223 (354-410)||(10599-10655)
[»] chr4 (3 HSPs)
chr4 (355-390)||(37853956-37853991)
chr4 (354-389)||(42647462-42647497)
chr4 (348-390)||(30617210-30617252)
[»] chr6 (2 HSPs)
chr6 (348-390)||(30530003-30530045)
chr6 (271-328)||(3736988-3737045)
[»] chr2 (3 HSPs)
chr2 (348-389)||(1813547-1813588)
chr2 (354-390)||(17505013-17505049)
chr2 (358-386)||(24743010-24743038)
[»] chr3 (2 HSPs)
chr3 (274-326)||(162902-162954)
chr3 (348-388)||(42141924-42141964)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 35655740 - 35655315
Alignment:
Q  16 aatataataaatataatttcaacataacaaagttaaattaaaatcacaaaactagaacaagggattatcaatcaatcaaccaaaccgaaataacatatac 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35655740 aatataataaatataatttcaacataacaaaattaaattaaaatcacaaaactagaacaagggattatcaatcaatcaaccaaaccgaaataacatatac 35655641  T
Q  116 attgtgacgtcgaaggagatccatagtcacttttgaagcatctttattatcctcctcaatcacttcactgcagaaacagaacaaaacaaattagagtaac 215  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35655640 attgtgacgttgaaggagatccatagtcacttttgaaacatctttattatcctcctcaatcacttcactgcagaaacagaacaaaacaaattagagtagc 35655541  T
Q  216 atcaaattaagccagataatcaatgtggttaaataccaacgctataggctgcagtgcggaatttgaacaaattgttataattccgcactatgctatttag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35655540 atcaaattaagccagataatcaatgtggttaaataccaacgctataggctgcagtgcggaatttgaacaaattgttataattccgcactatgctatttag 35655441  T
Q  316 tacaaaatattataaactaggtgaatgctctgtagcaatgttgcgtagcggaatttgaacaaaccactattttctactattcgcaattgataacagaaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35655440 tacaaaatattataaactaggtgaatgctctgtagcaatgttgcgtagcggaattagaacaaaccactattttctactattcgcaattgataacagaaaa 35655341  T
Q  416 ctattgatacataccttttaacttct 441  Q
    ||||||||||||||||||||||||||    
T  35655340 ctattgatacataccttttaacttct 35655315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 17484621 - 17484566
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttctactattcgcaatt 403  Q
    ||||| |||||| |||||||||||||||||| | ||||||||| |||| |||||||    
T  17484621 tagcagtgttgcttagcggaatttgaacaaatctctattttctgctatccgcaatt 17484566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 6026033 - 6025983
Alignment:
Q  273 ggaatttgaacaaattgttataattccgcactatgctatttagtacaaaat 323  Q
    ||||||||||||||| |||||  ||||||  ||||||||||||||||||||    
T  6026033 ggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaat 6025983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 15255201 - 15255159
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    |||||||||||| |||| |||||| ||||||||||||||||||    
T  15255201 tagcaatgttgcatagcagaatttaaacaaaccactattttct 15255159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 15955969 - 15956009
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactatttt 388  Q
    ||||| |||||| || |||||||||||||||||||||||||    
T  15955969 tagcactgttgcttaacggaatttgaacaaaccactatttt 15956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 9634931 - 9634889
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  9634931 tagcaatgttgcgtagcggaatttgaacaaaccgctattttct 9634889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 3147131 - 3147089
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||    
T  3147131 tagcactgtagcgtatcggaatttgaacaaaccactattttct 3147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 395
Target Start/End: Original strand, 32704479 - 32704507
Alignment:
Q  367 aatttgaacaaaccactattttctactat 395  Q
    |||||||||||||||||||||||||||||    
T  32704479 aatttgaacaaaccactattttctactat 32704507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 39647192 - 39647140
Alignment:
Q  271 gcggaatttgaacaaattgttataattccgcactatgctatttagtacaaaat 323  Q
    ||||||||||||||||| |||||  ||| ||  ||||||||||||||||||||    
T  39647192 gcggaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaat 39647140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 20502777 - 20502824
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttctactat 395  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  20502777 tagcaacgttgcgtagcggaatttgaacaaaccagtattttccactat 20502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 6518144 - 6518103
Alignment:
Q  349 agcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  6518144 agcaatgtagcgtagcagaatttgaacaaaccactattttct 6518103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 28989987 - 28989946
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttc 389  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  28989987 tagcagtgttgcgtagcggaatttgaacaaatcactattttc 28989946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 23117331 - 23117280
Alignment:
Q  359 cgtagcggaatttgaacaaaccactattttctactattcgcaattgataaca 410  Q
    |||||||||||||||||||||||||||||||  | || ||||||||| ||||    
T  23117331 cgtagcggaatttgaacaaaccactattttccgcaatccgcaattgacaaca 23117280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 32736084 - 32736045
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattt 387  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  32736084 tagcagtgttgcgtagcggaatttgaacaaaccgctattt 32736045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 19267779 - 19267811
Alignment:
Q  354 tgttgcgtagcggaatttgaacaaaccactatt 386  Q
    |||||||| ||||||||||||||||||||||||    
T  19267779 tgttgcgtggcggaatttgaacaaaccactatt 19267811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 24673401 - 24673365
Alignment:
Q  354 tgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    |||||| |||| |||||||||||||||||||||||||    
T  24673401 tgttgcatagctgaatttgaacaaaccactattttct 24673365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 389
Target Start/End: Original strand, 37684215 - 37684243
Alignment:
Q  361 tagcggaatttgaacaaaccactattttc 389  Q
    |||||||||||||||||||||||||||||    
T  37684215 tagcggaatttgaacaaaccactattttc 37684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 18899980 - 18899923
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttctactattcgcaattga 405  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| | ||| ||||||||    
T  18899980 tagcactgttgtgtagcggaatttgaacaaactactattttctgcgatttgcaattga 18899923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 22779599 - 22779552
Alignment:
Q  273 ggaatttgaacaaattgttataattccgcactatgctatttagtacaa 320  Q
    ||||||||||||||||||| || ||| ||| |||||||||||||||||    
T  22779599 ggaatttgaacaaattgttgtatttctgcaatatgctatttagtacaa 22779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 11813998 - 11814044
Alignment:
Q  364 cggaatttgaacaaaccactattttctactattcgcaattgataaca 410  Q
    |||||||||||||||||||||||||| |||| |||| ||||| ||||    
T  11813998 cggaatttgaacaaaccactattttccactaatcgcgattgacaaca 11814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 12742489 - 12742460
Alignment:
Q  360 gtagcggaatttgaacaaaccactattttc 389  Q
    ||||||||||||||||||||||||||||||    
T  12742489 gtagcggaatttgaacaaaccactattttc 12742460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 26818185 - 26818238
Alignment:
Q  357 tgcgtagcggaatttgaacaaaccactattttctactattcgcaattgataaca 410  Q
    |||||||||||||| ||||||||||||||  ||| | |||||||||||| ||||    
T  26818185 tgcgtagcggaattcgaacaaaccactatcctctgcgattcgcaattgacaaca 26818238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 41931045 - 41931101
Alignment:
Q  270 tgcggaatttgaacaaattgttataattccgcactatgctatttagtacaaaatatt 326  Q
    ||||||||||||| ||||||||||  |||| |  || ||||||||||||||||||||    
T  41931045 tgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatatt 41931101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 10655 - 10599
Alignment:
Q  354 tgttgcgtagcggaatttgaacaaaccactattttctactattcgcaattgataaca 410  Q
    |||||| |||| ||||||||||||||| ||||||||| | |||| ||||||||||||    
T  10655 tgttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattgataaca 10599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 37853991 - 37853956
Alignment:
Q  355 gttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37853991 gttgcgtagcggaatttgagcaaaccactattttct 37853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 42647462 - 42647497
Alignment:
Q  354 tgttgcgtagcggaatttgaacaaaccactattttc 389  Q
    ||||||||||||||||||||||||||| ||||||||    
T  42647462 tgttgcgtagcggaatttgaacaaaccgctattttc 42647497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 30617252 - 30617210
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  30617252 tagcattgttgcgtagtggaatttgaacaaaccgctattttct 30617210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 30530045 - 30530003
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||    
T  30530045 tagcactgttgcgtagcagaatttgaacaaaccgctattttct 30530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 3736988 - 3737045
Alignment:
Q  271 gcggaatttgaacaaattgttataattccgcactatgctatttagtacaaaatattat 328  Q
    |||||||||||||||||||||||  ||| ||  ||||||||| |||||||| ||||||    
T  3736988 gcggaatttgaacaaattgttattgttctgcgatatgctattcagtacaaactattat 3737045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 1813547 - 1813588
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactattttc 389  Q
    ||||| ||||| |||||||||||||||||||||| |||||||    
T  1813547 tagcactgttgtgtagcggaatttgaacaaaccattattttc 1813588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 17505013 - 17505049
Alignment:
Q  354 tgttgcgtagcggaatttgaacaaaccactattttct 390  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  17505013 tgttgtgtagcggaatttgaacaaacaactattttct 17505049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 24743010 - 24743038
Alignment:
Q  358 gcgtagcggaatttgaacaaaccactatt 386  Q
    |||||||||||||||||||||||||||||    
T  24743010 gcgtagcggaatttgaacaaaccactatt 24743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 162902 - 162954
Alignment:
Q  274 gaatttgaacaaattgttataattccgcactatgctatttagtacaaaatatt 326  Q
    |||||||||||||||||||| |||| ||  |  ||||||||||||||||||||    
T  162902 gaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatatt 162954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 42141924 - 42141964
Alignment:
Q  348 tagcaatgttgcgtagcggaatttgaacaaaccactatttt 388  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  42141924 tagcaatgttgtgtagcagagtttgaacaaaccactatttt 42141964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University