View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_26 (Length: 447)
Name: NF17152_low_26
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 52966896 - 52967337
Alignment:
| Q |
1 |
cctcatggaatataagcttatgcttgcgcttatgctgttatgcataaagttgcattcaattacttatatatt---tgttaaaatattaacgtgtttgtgt |
97 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52966896 |
cctcatggaatataagcttatgcttgcacttatgctgttatgcataaagttgcattcaattacttatatattatttgttaaaatattaacgtgtttgtgt |
52966995 |
T |
|
| Q |
98 |
ttgt--ttgaatcagtgctttatataagctaattaatttttactaagttttataacttaaataactggtaatttcctttaattattttgtccagaacctt |
195 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
52966996 |
ttgtgtttgaatcagtggtttatataagctaattaatttttactaagtttta--acttaaagaactggtaatttcctttaattatttcgtccagaacctt |
52967093 |
T |
|
| Q |
196 |
tttgaaaattaataagttcatatcaacctgcttttcacgtcatattatatgaatattcttaaacaaaggaacaaacaaaatcagcaaaagtggtttccct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52967094 |
tttgaaaattaataagttcatatcaacctgcttttcacgtcatattatatgaatattcttaaacaaaggaacaaacaaaatcagcaaaagtggtttccct |
52967193 |
T |
|
| Q |
296 |
taaataatagtattaataaattcaatgattcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattccgatccttg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52967194 |
taaataatagtattaataaattcaatgattcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattctgatccttg |
52967293 |
T |
|
| Q |
396 |
tttgaatccc-aaaaataacaagaactctttgcaactcctatgc |
438 |
Q |
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| T |
52967294 |
tttgaaccccaaaaaatagcaagaactctttgcaactcctatgc |
52967337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 325 - 434
Target Start/End: Original strand, 52971114 - 52971222
Alignment:
| Q |
325 |
tcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattccgatccttgtttgaatcccaaaaataacaagaactctt |
424 |
Q |
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||||||||| |||||||||||||||||||| | |||| |||||||| || ||||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
52971114 |
tcaattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatccc-aaaataacaagaactctt |
52971212 |
T |
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| Q |
425 |
tgcaactcct |
434 |
Q |
| |
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|||||||||| |
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| T |
52971213 |
tgcaactcct |
52971222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 2856080 - 2855983
Alignment:
| Q |
313 |
aaattcaatgat-tcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattccgatccttgtttgaatcccaaaa |
409 |
Q |
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||||||||||| ||||||||| ||||||||||| ||||||||||||| || ||||| ||||| ||||||| |||||| |||| || |||||||||| |
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| T |
2856080 |
aaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttccgaaccttccttaaatcccaaaa |
2855983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 2851964 - 2851924
Alignment:
| Q |
325 |
tcaattctttcatcttgattttcatcaaaattcttgataat |
365 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
2851964 |
tcaattctttcatcatgattttcatcgaaattcttgataat |
2851924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 10477986 - 10477932
Alignment:
| Q |
325 |
tcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttct |
379 |
Q |
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||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
10477986 |
tcaattcttccatcttggttttcatcaaaattcttgatcatcttctgacaattct |
10477932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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