View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_27 (Length: 446)
Name: NF17152_low_27
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 31055851 - 31055426
Alignment:
| Q |
1 |
aatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgtacctgaaaa |
100 |
Q |
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| T |
31055851 |
aatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgtacctgaaaa |
31055752 |
T |
|
| Q |
101 |
acagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaaccatacactggta |
200 |
Q |
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| T |
31055751 |
acagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaatcatacactggca |
31055652 |
T |
|
| Q |
201 |
actgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagaggaattgaatt |
300 |
Q |
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| T |
31055651 |
actgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagaggaattgaatt |
31055552 |
T |
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| Q |
301 |
aattcctatgactgaaaaacaaagaatggaggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaactagaagcata |
400 |
Q |
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| T |
31055551 |
aattcctatgactgaaaaacaaagaat---ggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaactagaagcata |
31055455 |
T |
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| Q |
401 |
gggatttgttgatcgattctcatattcat |
429 |
Q |
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| T |
31055454 |
gggatttgttgatcgattctcatattcat |
31055426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 34742775 - 34742869
Alignment:
| Q |
5 |
gctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgtacctgaaa |
99 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||| |||||| || | || ||| ||||||||| ||| || |||||||| |||||| |
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| T |
34742775 |
gctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattcttggccttctatgtatctgaaa |
34742869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 34743127 - 34743214
Alignment:
| Q |
338 |
ttcattacattcttctctccaacgatggcttcattaagtgcttctcttccaactagaagcatagggatttgttgatcgattctcatat |
425 |
Q |
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||||||||| ||||||||||||| || || ||||| || ||||||||| |||| ||||||||||| | ||| ||||| |||||||||| |
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| T |
34743127 |
ttcattacagtcttctctccaacaatagcatcatttagcgcttctctttcaacaagaagcataggaacttgctgatcaattctcatat |
34743214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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