View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_28 (Length: 441)
Name: NF17152_low_28
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 175 - 420
Target Start/End: Complemental strand, 37899881 - 37899621
Alignment:
| Q |
175 |
gtgttcgcatatcatggcatttgtcaatgtgaagcacacttcattttagttaagcttagtctgcagtcactcctgtcaaattctaaatcattagatgata |
274 |
Q |
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| T |
37899881 |
gtgttcgcatatcatggcatttgtcaatgtgaaccacacttcattttagttaagcttagtctgcagtcactcctgtcaaattctaaatcattagatgata |
37899782 |
T |
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| Q |
275 |
ttcaacaataaaaatttcacagcataggatgtatataaaataccaccacaagtcatttttctttcatac--atg-------------gttttccatatag |
359 |
Q |
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| T |
37899781 |
ttcaacaataaaaatttcacagcataggatgtatataaaataccaccacaaatcatttttctttcatacaaatgaagaatcataagacttttctatatag |
37899682 |
T |
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| Q |
360 |
aatcaatggttttccaacttgacacactccatcattgtccacatggtttcacccactagac |
420 |
Q |
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| T |
37899681 |
aatcaatggttttccaactttacacactccatcattgtccacatggtttcacccactagac |
37899621 |
T |
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