View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_29 (Length: 440)
Name: NF17152_low_29
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 33163960 - 33163557
Alignment:
| Q |
19 |
acttaatagcatcataccatacaacattaataacatgcattgtcaagtattgttggactatcaagatatcaagtgcaatgnnnnnnnnnnnnnnnaatga |
118 |
Q |
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| T |
33163960 |
acttaatagcataataccatacaacattaataacatgcattgtcaagtattgttagactatcaagatatcaagtgcaatgtatatgta-------aatga |
33163868 |
T |
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| Q |
119 |
ttgttcatacgattatagatattagtctgtctatttatcttattatggcatgaggcgaggagaaaacagaaatggaaaaccttgaatatttaaatcgttg |
218 |
Q |
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| T |
33163867 |
ttgttcatacgattatagatattagtct----atttatcttattatggcatgaggcgaggagaaaacagaaatggaaaaccttgaatatttaaatcgttg |
33163772 |
T |
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| Q |
219 |
gttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattattcattggtaaatcaacacatca |
318 |
Q |
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| T |
33163771 |
gtcagctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattattcattggtaaatcaacacatca |
33163672 |
T |
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| Q |
319 |
aacgtgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccacc |
418 |
Q |
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| T |
33163671 |
aacatgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccacc |
33163572 |
T |
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| Q |
419 |
aacacattcttctca |
433 |
Q |
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| T |
33163571 |
aacacattcttctca |
33163557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 46162285 - 46162427
Alignment:
| Q |
176 |
aggagaaaacagaaatggaaaaccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctgg |
275 |
Q |
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| T |
46162285 |
aggagaatgcagaaactgaaaaccttgaatgtttaagtcgttggtgggctcgaagcattcaagtaagggatcctcgggaagggatctgcaaaatggctgg |
46162384 |
T |
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| Q |
276 |
taactccccctgcataattattcattggtaaatcaacacatcaa |
319 |
Q |
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| T |
46162385 |
aaacttcccctgcataaatattcattggt-aattaacacatcaa |
46162427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 46162488 - 46162558
Alignment:
| Q |
348 |
agaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccacc |
418 |
Q |
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| T |
46162488 |
agaaatttacctccggtacagaaagataacagcatatccagccttcagaaagtacctgcaaagtaaccacc |
46162558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 46162036 - 46162112
Alignment:
| Q |
18 |
cacttaatagcatcataccatacaacattaataacatgcattgtcaagtattgttggactatcaagatatcaagtgcaatg |
98 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||| ||| |||| | ||||||||||||||||||||||| |
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| T |
46162036 |
cacttaatatcatcataccatacaacatgaataacatgcattgacaaatattat----ctatcaagatatcaagtgcaatg |
46162112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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