View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_32 (Length: 430)
Name: NF17152_low_32
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 42114286 - 42114708
Alignment:
| Q |
14 |
atcagtgcataaaaaataaagagttgtatggaatagttcttt-----atatttgaaatggtttataaaagagaggataaaaagaagctgaagagcttata |
108 |
Q |
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| T |
42114286 |
atcagtggataaaaaataaagagttgtatggaatagttcttttccatatatttgaaatggtttataaaagagagaataaaaagaagctgaagagcttata |
42114385 |
T |
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| Q |
109 |
ttttgaccttttttgaagaaatagtttttctaaaaagtatgaactctgccagaacaattgttggagtaacagcaatcttagccatttggtagaaaccaac |
208 |
Q |
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| T |
42114386 |
ttttgaccttttttgaagaaatagtttttctaaaaagtatgaactctgccagaacaattgttggagtaacagcaatcttagccatttggtagaaaccaac |
42114485 |
T |
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| Q |
209 |
actgcatgaactgaactgtcagcaaaaaggacta-ttcaagaagataagttatatcttctattcatctaggtgacatctacaatacataataatgacttt |
307 |
Q |
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| T |
42114486 |
actgcatgaactgaactgtcagcaaaaaggactaattcaagaagataagttatatcttctattcatctaggtgacatctacaatacataataatgacttt |
42114585 |
T |
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| Q |
308 |
gttgttgtcaacatggatttaattaattttggtgctgagaactgaaacattctttatagtatatatcattcaatgatcacatttacaaatttgaaacata |
407 |
Q |
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| T |
42114586 |
gttgttgtcaacatggatttaattaattttggtgctgagaactgaaacattctttatagtatatatcattcaatgatcacatttacaaatttgaaacata |
42114685 |
T |
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| Q |
408 |
aggggacagtaatgaaaatcggt |
430 |
Q |
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| T |
42114686 |
aggggacagtaatgaaaatcggt |
42114708 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 469354 - 469318
Alignment:
| Q |
350 |
tgaaacattctttatagtatatatcattcaatgatca |
386 |
Q |
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| T |
469354 |
tgaaacattgtttacagtatatatcattcaatgatca |
469318 |
T |
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