View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_33 (Length: 430)
Name: NF17152_low_33
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_33 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 48495021 - 48494621
Alignment:
| Q |
18 |
tggcatacatatgaattgagggtaagttcgagttgaattagaattctaattcttcattgttggttctactcatttatttattccttttcacttattatga |
117 |
Q |
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| T |
48495021 |
tggcatacatatgaattgagggtaagttcgagttgaattagaattctaattcttcattgttggtt--------ttatttattccttttcacttattatga |
48494930 |
T |
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| Q |
118 |
tttgattattgtttagaatggattcacnnnnnnnnnnnnngatctagttcttcaaatgaatgattgattagtgtcacatgcacatcagaattcataagtt |
217 |
Q |
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| T |
48494929 |
tttgattgttgtttagaatggactcactttttggttttttgatctagttcttcaaatgaatgatt----agtgtcacatgcacatcagaattcataagtt |
48494834 |
T |
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| Q |
218 |
tgttgaaataacaacttttggnnnnnnnattctacttaggaaaattcaaattgtcttttataactttgttattggtaaaaaagtatccatgagctttact |
317 |
Q |
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| T |
48494833 |
tgttgaaataacaacttttggtttttttattctacttaggaaaattcaaattgtcttttataactttgttattggtaaaaaagtatccatgagctttact |
48494734 |
T |
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| Q |
318 |
gataactaatctcccgacttccgtagagaatctggttggccacccttagtgaaatcatgcatcccaaccacattttttccatttacgaggtttggagacc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
48494733 |
gataactaatctcccgacttccgtagagaatctggttggccacccttagtgaaatcatgcatcccaaccacattttttccattcatgaggtttggagacc |
48494634 |
T |
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| Q |
418 |
cgaagccttgctc |
430 |
Q |
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| T |
48494633 |
cgaagccttgctc |
48494621 |
T |
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