View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_38 (Length: 408)
Name: NF17152_low_38
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 313
Target Start/End: Complemental strand, 43379281 - 43378999
Alignment:
| Q |
35 |
tctttggtctgcaaagagtgttaaaa---gatcaaaagatgcatccgaagagaggaatatatggcttcttacgagaaatcgaagcaaaattgtgaatctt |
131 |
Q |
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| T |
43379281 |
tctttggtctgcaaagagtgttaaaaaaagatcaaaagatgcatccgaagagaggaatatacggcttcttacgagaaatcgaagcaaaattgtgaatctt |
43379182 |
T |
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| Q |
132 |
gaaaggcttcttctaccgtaatcatagactcttatacctaaagtgcnnnnnnnnn-gacgtgaaaagttgtaaacaaagctcacgggggagctgttttga |
230 |
Q |
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| T |
43379181 |
gaaaggcttcttctaccgtaatcatagattcttatacctaaagtgcaaaaaaaaaagacgtgaaaagttgtaaacaaagctcacgggggagctgttttga |
43379082 |
T |
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| Q |
231 |
acaagttctcaaataggagctgaagaagaaagatgtggtcgggaaaacaacataaagacgaggggaagctgaaagataatgat |
313 |
Q |
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| T |
43379081 |
acaagttctcaaataggagctgaagaagaaagatgtggtcgggaaaacaacataaagacgaggggaagctgaaagataatgat |
43378999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 43378974 - 43378926
Alignment:
| Q |
343 |
cttaccataaagaacaaggttccagagttaatttttgttcgtattaaat |
391 |
Q |
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| T |
43378974 |
cttaccataaagaacaaggttccagagttaatttttgttcgtattaaat |
43378926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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