View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_39 (Length: 401)

Name: NF17152_low_39
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_39
NF17152_low_39
[»] chr6 (21 HSPs)
chr6 (235-381)||(9414875-9415023)
chr6 (56-166)||(9415141-9415251)
chr6 (240-315)||(9415031-9415106)
chr6 (244-318)||(5378651-5378725)
chr6 (235-318)||(19645527-19645610)
chr6 (325-381)||(32796044-32796100)
chr6 (235-300)||(15149272-15149337)
chr6 (244-296)||(5376818-5376870)
chr6 (53-102)||(5377015-5377064)
chr6 (53-102)||(5378870-5378919)
chr6 (56-168)||(1088701-1088813)
chr6 (256-296)||(30376225-30376265)
chr6 (325-379)||(17521897-17521950)
chr6 (11-55)||(8915646-8915690)
chr6 (53-101)||(24544757-24544805)
chr6 (326-381)||(13168863-13168918)
chr6 (6-53)||(31528957-31529004)
chr6 (131-169)||(15868462-15868500)
chr6 (235-296)||(1088880-1088945)
chr6 (260-296)||(30371853-30371889)
chr6 (52-143)||(30488532-30488622)
[»] chr4 (17 HSPs)
chr4 (235-315)||(23564902-23564982)
chr4 (244-318)||(52520520-52520594)
chr4 (235-296)||(7040304-7040365)
chr4 (244-296)||(52518700-52518752)
chr4 (235-296)||(18656051-18656112)
chr4 (53-169)||(54296498-54296614)
chr4 (11-169)||(52518829-52518982)
chr4 (11-169)||(23564684-23564836)
chr4 (53-169)||(52520671-52520788)
chr4 (54-105)||(52545149-52545200)
chr4 (53-169)||(7040431-7040547)
chr4 (53-169)||(18656178-18656294)
chr4 (235-296)||(3274667-3274728)
chr4 (62-168)||(23985845-23985951)
chr4 (53-102)||(56074691-56074740)
chr4 (131-169)||(3529270-3529308)
chr4 (131-169)||(23566472-23566510)
[»] chr7 (19 HSPs)
chr7 (244-318)||(28124826-28124900)
chr7 (235-323)||(44963079-44963167)
chr7 (244-318)||(4895503-4895577)
chr7 (244-298)||(20046735-20046789)
chr7 (11-169)||(28124596-28124749)
chr7 (11-169)||(28126423-28126576)
chr7 (244-296)||(28126653-28126705)
chr7 (324-381)||(6711981-6712038)
chr7 (53-169)||(20046540-20046658)
chr7 (54-143)||(29598018-29598108)
chr7 (251-318)||(6323991-6324058)
chr7 (235-294)||(44962228-44962287)
chr7 (53-102)||(28014318-28014367)
chr7 (11-169)||(4895654-4895806)
chr7 (325-381)||(25033858-25033913)
chr7 (325-381)||(4316572-4316625)
chr7 (251-296)||(6322931-6322976)
chr7 (131-169)||(37405573-37405611)
chr7 (53-102)||(8405644-8405693)
[»] chr8 (16 HSPs)
chr8 (56-169)||(6428810-6428924)
chr8 (235-298)||(30224171-30224234)
chr8 (243-298)||(5567676-5567731)
chr8 (235-294)||(31032226-31032285)
chr8 (235-296)||(5567369-5567430)
chr8 (249-294)||(3375664-3375709)
chr8 (53-105)||(31032049-31032101)
chr8 (53-169)||(5567496-5567612)
chr8 (53-169)||(30224300-30224416)
chr8 (57-105)||(19473665-19473713)
chr8 (57-105)||(19544590-19544638)
chr8 (57-105)||(19588058-19588106)
chr8 (64-169)||(3379171-3379275)
chr8 (53-169)||(25249076-25249192)
chr8 (262-296)||(25248955-25248989)
chr8 (235-282)||(6428699-6428744)
[»] scaffold0057 (1 HSPs)
scaffold0057 (53-169)||(58856-58971)
[»] chr1 (11 HSPs)
chr1 (235-296)||(48940619-48940680)
chr1 (244-296)||(16808817-16808869)
chr1 (325-381)||(24680629-24680685)
chr1 (11-169)||(16808587-16808740)
chr1 (53-169)||(17449381-17449496)
chr1 (235-289)||(17449261-17449315)
chr1 (257-297)||(51020569-51020609)
chr1 (131-169)||(3282871-3282909)
chr1 (131-169)||(3284572-3284610)
chr1 (131-169)||(9312099-9312137)
chr1 (53-105)||(5924831-5924883)
[»] chr2 (8 HSPs)
chr2 (235-296)||(29758063-29758124)
chr2 (235-294)||(8759210-8759269)
chr2 (325-381)||(22577864-22577920)
chr2 (240-296)||(31155714-31155770)
chr2 (53-169)||(29758190-29758306)
chr2 (325-381)||(24018137-24018193)
chr2 (53-102)||(18612085-18612134)
chr2 (240-285)||(20516182-20516227)
[»] chr3 (7 HSPs)
chr3 (244-296)||(17403021-17403073)
chr3 (53-169)||(6789690-6789805)
chr3 (243-296)||(6789563-6789616)
chr3 (53-169)||(1140071-1140187)
chr3 (53-102)||(17402827-17402876)
chr3 (235-294)||(1139958-1140017)
chr3 (56-143)||(9032752-9032840)
[»] chr5 (1 HSPs)
chr5 (53-105)||(20012968-20013020)
[»] scaffold0035 (1 HSPs)
scaffold0035 (324-381)||(30624-30681)
[»] scaffold0189 (1 HSPs)
scaffold0189 (53-105)||(19079-19131)
[»] scaffold0251 (1 HSPs)
scaffold0251 (131-169)||(6296-6334)
[»] scaffold0006 (1 HSPs)
scaffold0006 (58-102)||(39281-39325)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 9415023 - 9414875
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatggaaaaactcataatgac 334  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9415023 tgatcactaactctagtctaactaccttaactaactccgcataacttccaactattttaacagcctcccttaaactcaaaatggaaaaactcataatgac 9414924  T
Q  335 aaatctttcacaatccaaccc--tcatacctaaatattatgttaaatct 381  Q
    ||| |||||||||||||||||  | ||||||||||||||||||||||||    
T  9414923 aaacctttcacaatccaaccctataatacctaaatattatgttaaatct 9414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 9415251 - 9415141
Alignment:
Q  56 cataagaatactcatgtgggagatattcatagaaactcattgtagaatgatagatttgattaaaagatgaatagagagtacaatggtgttcctatatata 155  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  9415251 cataagagtactcatgtgggagatactcatagaaactcattgtagaatgatagatttgattaaaagatgactagagagtacaatagtgttcttatatata 9415152  T
Q  156 gacattagttt 166  Q
    || ||||||||    
T  9415151 gagattagttt 9415141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 9415106 - 9415031
Alignment:
Q  240 actaactctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaa 315  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9415106 actaactctagtctaacttccttaactaactccacataacttccaactattttaacagcctcccttaaactcaaaa 9415031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 5378725 - 5378651
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||    
T  5378725 actctagtctaactaccttaactaactacacataacttccaactaatttaacagcctccctcaaactcaaaatgg 5378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 19645527 - 19645610
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||| || |||||| |||||||||||||    
T  19645527 tgattactaactctagtctaactaccttaactaactccacatatcttctaactatcttaagagcctccctcaaactcaaaatgg 19645610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 32796044 - 32796100
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  32796044 tcataatgacaaatctttcacaatccaaccctaatacctaaatcttatgttaaatct 32796100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 15149272 - 15149337
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagtct 300  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  15149272 tgattactaactcaagtctaactaccttaactaactccgcataacttccaactatcttaatagtct 15149337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 5376870 - 5376818
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5376870 actctagtctaactaccttaactaactacatataacttccaactattttaaca 5376818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 5377064 - 5377015
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5377064 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaa 5377015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 5378919 - 5378870
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5378919 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaa 5378870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 1088701 - 1088813
Alignment:
Q  56 cataagaatactcatgtgggagatattcata-gaaactcattgtagaatga-tagatttgattaaaagatgaatagagagtacaatggtgttcctatata 153  Q
    ||||||| ||||||| ||||||||| ||| | |||||||||| |||||||| |||||| ||| |||||||||  |  ||||||||| |||||||||||||    
T  1088701 cataagagtactcatatgggagatactcaaaagaaactcattatagaatgaatagatt-gat-aaaagatgatgaatgagtacaatagtgttcctatata 1088798  T
Q  154 tagacattagtttga 168  Q
    |||| ||||||||||    
T  1088799 tagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 30376265 - 30376225
Alignment:
Q  256 ctaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  30376265 ctacgttaactaactccacataacttccaactattttaaca 30376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 17521897 - 17521950
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaat 379  Q
    |||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||    
T  17521897 tcataatgacaaatctttcacaatccaaacct-atatctaaatcttatgttaaat 17521950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 8915690 - 8915646
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataag 55  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||    
T  8915690 catagagataaaaatcatagatgtaagcaagagagcaagcataag 8915646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24544805 - 24544757
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtaga 101  Q
    |||||||||| |||||||| |||||||| |||||||||||||| |||||    
T  24544805 aagcataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 13168918 - 13168863
Alignment:
Q  326 cataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||| |||||||||||||||||| | | |||||||||| ||| |||||||||    
T  13168918 cataatgagaaatctttcacaatccaaacttaatacctaaatcttacgttaaatct 13168863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 31529004 - 31528957
Alignment:
Q  6 agaagcatagggatgaaaatcatagatgtaagcaaaagagcaagcata 53  Q
    |||| |||||||||||| ||||||||||||||||| | ||||||||||    
T  31529004 agaatcatagggatgaagatcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 15868500 - 15868462
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  15868500 gagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 1088880 - 1088945
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactc----cacataacttccaactattttaaca 296  Q
    ||||||||||||||| | ||||||| ||||||||||     |||||||||||||| ||||||||||    
T  1088880 tgatcactaactctaatttaactactttaactaactaacttcacataacttccaagtattttaaca 1088945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 30371889 - 30371853
Alignment:
Q  260 cttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||| | |||||||||||||||||||||||||    
T  30371889 cttaactaatttcacataacttccaactattttaaca 30371853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 30488622 - 30488532
Alignment:
Q  52 taagcataagaatactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaagatgaatagagagtacaatggtg 143  Q
    ||||||||| ||||||||||||| |||||   ||| ||||||||| ||||||| ||||| |||| |||||||| | |||||| ||||||||||    
T  30488622 taagcataaaaatactcatgtggaagataccgataaaaactcattatagaatgaataga-ttga-taaaagataactagagattacaatggtg 30488532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 23564902 - 23564982
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaa 315  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  23564902 tgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacagcctccctcaaactcaaaa 23564982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 52520594 - 52520520
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  52520594 actctagtctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatgg 52520520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 7040365 - 7040304
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7040365 tgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 7040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 52518752 - 52518700
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52518752 actctagtctaactaccttaactaactacacataacttccaactattttaaca 52518700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 18656112 - 18656051
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  18656112 tgattactaactctagtctaactaccttaactaacttcacataacttccggctattttaaca 18656051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 54296614 - 54296498
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatga-tagatttgattaaaagatgaatagagagtacaatggtgttcctata 151  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||| || ||||| | |||| ||||||||||| |  |  ||||||||| |||||||||||    
T  54296614 aagcataagagtactgatgagggagatactcatagaaactcattataaaatgaattgatt-gattaaaagatcatgaatgagtacaatagtgttcctata 54296516  T
Q  152 tatagacattagtttgag 169  Q
    |||||| |||||||||||    
T  54296515 tatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 52518982 - 52518829
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatag-a 109  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||    ||||  ||||||||||||||| ||||||| |  |||  | |||||| |  |    
T  52518982 catagggagaaagatcatagatgtaagcaagagagcaagcataag----agaa--ctcatgtgggagatactcatagagatccatattggaatgaaaata 52518889  T
Q  110 tttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||||||||||  |  ||||||||  ||||||||||||||||| |||||||||||    
T  52518888 tttgattaaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 23564684 - 23564836
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tag 108  Q
    ||||||||  ||| |||||||||||||||||| ||||||||||||      | |||||||| |||||||| ||| || |||||||||||||| ||| |||    
T  23564684 catagggagaaaagtcatagatgtaagcaaaatagcaagcataag------agtactcatgagggagatactcaaagtaactcattgtagaaatgaatag 23564777  T
Q  109 atttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||| ||| ||||||| |  |  ||||||||| ||||||||||||||||| |||||||||||    
T  23564778 att-gat-aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 52520788 - 52520671
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatag-atttgattaaaagatgaatagagagtacaatggtgttcctata 151  Q
    |||||||||| ||||||||||||||||| ||||||| |  |||  |  ||||| |  |||||||||||||||||  |  ||||||||| |||||||||||    
T  52520788 aagcataagagtactcatgtgggagatactcatagagatccatattgaaatgaaaatatttgattaaaagatgatgaatgagtacaatagtgttcctata 52520689  T
Q  152 tatagacattagtttgag 169  Q
    |||||| |||||||||||    
T  52520688 tatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 52545149 - 52545200
Alignment:
Q  54 agcataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  52545149 agcataagagtactcatgtgggagatactcatagaaactcattatagaatga 52545200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 7040547 - 7040431
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||||| ||| |||||| ||| ||||||| |  |  ||||||||| ||||||||||    
T  7040547 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt-gat-aaaagataatgaatgagtacaatagtgttcctat 7040450  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  7040449 atatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 18656294 - 18656178
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtag-aatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||| |||| ||||| |||| ||||||||||  |  ||||||||| || |||||||    
T  18656294 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaataga-ttga-taaaagatgatgaatgagtacaatagttttcctat 18656197  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  18656196 atatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 3274667 - 3274728
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| ||||||| |||| | |||||||||||||||| || ||||||||||||||||||||||    
T  3274667 tgattactaactatagttttactaccttaactaacttcatataacttccaactattttaaca 3274728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 23985951 - 23985845
Alignment:
Q  62 aatactcatgtgggagatattcatagaaactcattgtagaatga-tagatttgattaaaagatgaatagagagtacaatggtgttcctatatatagacat 160  Q
    |||| ||||||||||||||  |||||| |||||| | ||||| | |||||||||| ||||||||   |  ||||||||| ||||||||||||||||| ||    
T  23985951 aatattcatgtgggagataaccatagagactcataggagaatcaatagatttgat-aaaagatggtgaatgagtacaatagtgttcctatatatagagat 23985853  T
Q  161 tagtttga 168  Q
    ||||||||    
T  23985852 tagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 56074691 - 56074740
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| ||||||||||||||||| |||||||||||| || |||||    
T  56074691 aagcataagagtactcatgtgggagatactcatagaaactcgttatagaa 56074740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 3529270 - 3529308
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  3529270 gagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 23566472 - 23566510
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  23566472 gagtacaatagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 28124826 - 28124900
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  28124826 actctagtctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatgg 28124900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 44963167 - 44963079
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatggaaaaa 323  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||| ||||    
T  44963167 tgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaa 44963079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 4895577 - 4895503
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  4895577 actctaatctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatgg 4895503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 20046735 - 20046789
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaacagt 298  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20046735 actctagtctaactaccttaactaactacacataacttccaactattttaacagt 20046789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 28124596 - 28124749
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatag-a 109  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||      | ||||||||||||||||| ||||||| |  |||  | |||||| |  |    
T  28124596 catagggagaaagatcatagatgtaagcaagagagcaagcataag------agtactcatgtgggagatactcatagagatccatattggaatgaaaata 28124689  T
Q  110 tttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||||||||||  |  ||||||||| ||||||||||||||||| |||||||||||    
T  28124690 tttgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 28126423 - 28126576
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatag-a 109  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||      | ||||||||||||||||| ||||||| |  |||  | |||||| |  |    
T  28126423 catagggagaaagatcatagatgtaagcaagagagcaagcataag------agtactcatgtgggagatactcatagagatccatattggaatgaaaata 28126516  T
Q  110 tttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||||||||||  |  ||||||||| ||||||||||||||||| |||||||||||    
T  28126517 tttgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 28126653 - 28126705
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28126653 actctagtctaactaccttaactaactacacataacttccaactattttaaca 28126705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 6711981 - 6712038
Alignment:
Q  324 ctcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  6711981 ctcataatgacaaatctttcacaatccaaccataatacctaaatcttatgttaaatct 6712038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 20046540 - 20046658
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtag-aatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||| |||||||    |  ||||||||| ||||||||||    
T  20046540 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaataga-ttgataaaaagatattgaatgagtacaatagtgttcctat 20046638  T
Q  151 atat-agacattagtttgag 169  Q
    |||| ||| |||||||||||    
T  20046639 atataagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 29598018 - 29598108
Alignment:
Q  54 agcataagaatactcatgtgggagatattcatagaaactcattgtagaatga--tagatttgattaaaagatgaatagagagtacaatggtg 143  Q
    ||||||||| || ||||||||||||||  |||||| |||||| |||||||||  ||||||||| ||||||||||||| |||||| |||||||    
T  29598018 agcataagagtattcatgtgggagatacccatagagactcatagtagaatgaactagatttga-taaaagatgaataaagagtataatggtg 29598108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 6324058 - 6323991
Alignment:
Q  251 tctaactaccttaactaactccacataacttccaactattttaacagtctcccttaaactcaaaatgg 318  Q
    |||||||| || ||||||||||||||||||| | |||||||||||| ||| ||| |||||||||||||    
T  6324058 tctaactatctaaactaactccacataactttctactattttaacaatctacctcaaactcaaaatgg 6323991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 44962287 - 44962228
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaa 294  Q
    |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  44962287 tgattactcactcaagtctaactaccttaactaacttcacataacttccaactatgttaa 44962228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 28014318 - 28014367
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  28014318 aagcataagagtgctcatgtgggagatactcatagaaactcattgtagaa 28014367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 4895806 - 4895654
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatagat 110  Q
    ||||||||  || ||||||||||||||||| ||||||| ||||||      | ||||||| ||||||||| ||||||| |  |||  | |||||| | ||    
T  4895806 catagggagaaagatcatagatgtaagcaagagagcaaacataag------agtactcatctgggagatactcatagagatccatattggaatga-atat 4895714  T
Q  111 -ttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
     |||||||||||||||  |  ||||||||| ||||||||||||||||| |||||||||||    
T  4895713 attgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 25033858 - 25033913
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||    
T  25033858 tcataatgacaaatctttcacaatctgaccct-atacctaaatcttatgttaaatct 25033913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 4316572 - 4316625
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    ||||||||||||||||||||||||||| |   ||||||||||| |||||||||||||    
T  4316572 tcataatgacaaatctttcacaatccatc---catacctaaatcttatgttaaatct 4316625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 6322976 - 6322931
Alignment:
Q  251 tctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||    
T  6322976 tctaactaccgtaattaactccatataacttccaactattttaaca 6322931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 37405573 - 37405611
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  37405573 gagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 8405693 - 8405644
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| || ||||| |||||||| || ||||||||||||||||||    
T  8405693 aagcataagagtattcatgggggagataatcgtagaaactcattgtagaa 8405644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 6428924 - 6428810
Alignment:
Q  56 cataagaatactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctatatat 154  Q
    ||||||| |||||||||| |||||| ||| |||||||||||||||| || |||||||||||||||||||||  |  || |||||| ||||||||||||||    
T  6428924 cataagagtactcatgtgagagatactcaaagaaactcattgtagagtgaatagatttgattaaaagatgatgaatgattacaatagtgttcctatatat 6428825  T
Q  155 agacattagtttgag 169  Q
    ||| |||||||||||    
T  6428824 agagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 30224234 - 30224171
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaacagt 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30224234 tgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacagt 30224171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 5567676 - 5567731
Alignment:
Q  243 aactctagtctaactaccttaactaactccacataacttccaactattttaacagt 298  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  5567676 aactctagtctaactaccttaactaacttcacataacttccagctattttaacagt 5567731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 31032226 - 31032285
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaa 294  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31032226 tgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 31032285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 5567430 - 5567369
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  5567430 tgattactaactctagtctaactactttaactaacttcacataacttccagctattttaaca 5567369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 3375664 - 3375709
Alignment:
Q  249 agtctaactaccttaactaactccacataacttccaactattttaa 294  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3375664 agtctaactaccttaactaactccacataacttccaactatcttaa 3375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 31032049 - 31032101
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  31032049 aagcataagagtactcatgtgggagatactcatagaaactcattatagaatga 31032101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 5567612 - 5567496
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtag-aatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||| |||| ||||| |||| ||||||||||  |  ||||||||| || |||||||    
T  5567612 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaataga-ttga-taaaagatgatgaatgagtacaatagttttcctat 5567515  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  5567514 atatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 30224416 - 30224300
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||||| ||| |||||| ||| ||||||| |  |  ||||||||| ||||||||||    
T  30224416 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt-gat-aaaagataatgaatgagtacaatagtgttcctat 30224319  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  30224318 atatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 19473713 - 19473665
Alignment:
Q  57 ataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  19473713 ataagagtactcatgtgggagatactcatagaaactcattatagaatga 19473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 19544638 - 19544590
Alignment:
Q  57 ataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  19544638 ataagagtactcatgtgggagatactcatagaaactcattatagaatga 19544590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 19588058 - 19588106
Alignment:
Q  57 ataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  19588058 ataagagtactcatgtgggagatactcatagaaactcattatagaatga 19588106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 3379171 - 3379275
Alignment:
Q  64 tactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaa--gatgaatagagagtacaatggtgttcctatatatagacat 160  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||||  |||||||   ||||||||| || |||||  ||||||| ||    
T  3379171 tactcatgtgggagatactcatagaaactcattatagaatgaataga-ttgataaaaaatgatgaat---gagtacaatagttttccttaatatagagat 3379266  T
Q  161 tagtttgag 169  Q
    |||||||||    
T  3379267 tagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 25249192 - 25249076
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||  |||||||| |||||||| ||| || |||||||||||||| ||| |||||| ||| ||||||| |  |  ||||||||| ||||||||||    
T  25249192 aagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt-gat-aaaagatcatgaatgagtacaatagtgttcctat 25249095  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  25249094 atatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 25248989 - 25248955
Alignment:
Q  262 taactaactccacataacttccaactattttaaca 296  Q
    |||||||||||||||||||||||||||| ||||||    
T  25248989 taactaactccacataacttccaactatcttaaca 25248955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 6428744 - 6428699
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttc 282  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||    
T  6428744 tgattactaactcttgtctaactac--taactaactccacataacttc 6428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 58971 - 58856
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctata 151  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| |||| ||||||||||  |  ||||||||| |||||||||||    
T  58971 aagcataagagtactcatgtgggagatactcatagaaactcattatagaatgaataga-ttga-taaaagatgatgaatgagtacaatagtgttcctata 58874  T
Q  152 tatagacattagtttgag 169  Q
    |||||| |||||||||||    
T  58873 tatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 48940680 - 48940619
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48940680 tgattactaactcttgtctaactaccttaactaactccacataacttccaactattttaaca 48940619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 16808817 - 16808869
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16808817 actctagtctaactaccttaactaactacacataacttccaactattttaaca 16808869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 24680685 - 24680629
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  24680685 tcataatgacaaatctttcacaatccaaccctaatacctaaatcttatgttaaatct 24680629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 16808587 - 16808740
Alignment:
Q  11 catagggatgaaaatcatagatgtaagcaaaagagcaagcataagcataagaatactcatgtgggagatattcatagaaactcattgtagaatgatag-a 109  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||      | ||||||||| ||||||| ||||||| |  |||  | |||||| |  |    
T  16808587 catagggagaaagatcatagatgtaagcaagagagcaagcataag------agtactcatgtcggagatactcatagagatccatattggaatgaaaata 16808680  T
Q  110 tttgattaaaagatgaatagagagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||||||||||  |  ||||||||| |||||| |||||||||| |||||||||||    
T  16808681 tttgattaaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 17449496 - 17449381
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtaga-atg-atagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    ||||| |||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||| ||||  ||||||| |  |  ||||||||| ||||||||||    
T  17449496 aagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaataga-ttga--aaaagataatgaatgagtacaatagtgttcctat 17449400  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  17449399 atatagagattagtttgag 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 17449315 - 17449261
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactat 289  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  17449315 tgattactaactcaagtccaactaccttaactaactccatataacttccaactat 17449261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 51020609 - 51020569
Alignment:
Q  257 taccttaactaactccacataacttccaactattttaacag 297  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  51020609 taccttaaccaactccacataacttccaactattttaacag 51020569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 3282909 - 3282871
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  3282909 gagtacaatagtgttcctatatatagagattagtttgag 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 3284610 - 3284572
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  3284610 gagtacaatagtgttcctatatatagagattagtttgag 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 9312137 - 9312099
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  9312137 gagtacaatagtgttcctatatatagagattagtttgag 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 5924831 - 5924883
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||||||| || |||| | ||||||| ||||||||||||||| ||||||||    
T  5924831 aagcataagagtattcatataggagatactcatagaaactcattatagaatga 5924883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 29758124 - 29758063
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29758124 tgattactaagtctagtctaactaccttaactaactccacataacttccaactatcttaaca 29758063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 8759210 - 8759269
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaa 294  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  8759210 tgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 8759269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 22577864 - 22577920
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  22577864 tcataatgacaaatctttcacaatccaaccataatacctaaatcttatgttaaatct 22577920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 31155714 - 31155770
Alignment:
Q  240 actaactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  31155714 actaactctagtttaactaccttaactaactccgcataacttccaactattctaaca 31155770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 29758306 - 29758190
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||||| ||| |||||| ||| ||||||| |  |  ||||||||| ||||||||||    
T  29758306 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt-gat-aaaagataatgaatgagtacaatagtgttcctat 29758209  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  29758208 atatagagattagtttgag 29758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 24018137 - 24018193
Alignment:
Q  325 tcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||  ||||||||||||    
T  24018137 tcataatgataaatctttcacaatccaaacctaatacctaaatcctatgttaaatct 24018193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 18612085 - 18612134
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| ||||||||||||||||||| | | ||||||||| |||||    
T  18612085 aagcataagagtactcatgtgggagatatttacaaaaactcattatagaa 18612134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20516182 - 20516227
Alignment:
Q  240 actaactctagtctaactaccttaactaactccacataacttccaa 285  Q
    |||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  20516182 actaactccagtttaattaccttaactaactgcacataacttccaa 20516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 17403021 - 17403073
Alignment:
Q  244 actctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17403021 actctagtctaactaccttaactaactacacataacttccaactattttaaca 17403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 6789805 - 6789690
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaagatgaatagagagtacaatggtgttcctata 151  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||  |  |||||||    |  ||||||||| || ||||||||    
T  6789805 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaatgaatagattgaa--aaaagatagtgaatgagtacaatagtattcctata 6789708  T
Q  152 tatagacattagtttgag 169  Q
    |||||| |||||||||||    
T  6789707 tatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 6789616 - 6789563
Alignment:
Q  243 aactctagtctaactaccttaactaactccacataacttccaactattttaaca 296  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  6789616 aactctagtctaactaccttaactaactacacattacttccaactattttaaca 6789563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 1140187 - 1140071
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa-tga-tagatttgattaaaagatgaatagagagtacaatggtgttcctat 150  Q
    |||||||||| |||||||| |||||||| ||| || |||||||||||||| ||| |||||| ||| |||||||||  |  ||||||||| ||||||||||    
T  1140187 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt-gat-aaaagatgatgaatgagtacaatagtgttcctat 1140090  T
Q  151 atatagacattagtttgag 169  Q
    ||||||| |||||||||||    
T  1140089 atatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 17402827 - 17402876
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  17402827 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaa 17402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 1140017 - 1139958
Alignment:
Q  235 tgatcactaactctagtctaactaccttaactaactccacataacttccaactattttaa 294  Q
    |||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||    
T  1140017 tgattactaactcaagtccaactaccttaactaactccatataacttccaactatcttaa 1139958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 9032752 - 9032840
Alignment:
Q  56 cataagaatactcatgtgggagatattcatagaaactcattgtagaatg-atagatttgattaaaagatgaat-agagagtacaatggtg 143  Q
    |||| ||||| ||||||||||||||  ||||||||||||| |||||| | ||||||| || |||||||||| | |||| |||||||||||    
T  9032752 catacgaatattcatgtgggagatacccatagaaactcatagtagaaggaatagattgga-taaaagatgattaagagcgtacaatggtg 9032840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 20012968 - 20013020
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  20012968 aagcataagagtactcatgtgggagatactcatagaaactcattatagaatga 20013020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 30624 - 30681
Alignment:
Q  324 ctcataatgacaaatctttcacaatccaaccctcatacctaaatattatgttaaatct 381  Q
    |||||||||| ||||| |||||||||||||||| | |||||||  |||||||||||||    
T  30624 ctcataatgaaaaatccttcacaatccaaccctaaaacctaaaccttatgttaaatct 30681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 19131 - 19079
Alignment:
Q  53 aagcataagaatactcatgtgggagatattcatagaaactcattgtagaatga 105  Q
    ||||||| || ||||||||||||||||  ||||||||||||||| ||||||||    
T  19131 aagcataggagtactcatgtgggagatgctcatagaaactcattatagaatga 19079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 6334 - 6296
Alignment:
Q  131 gagtacaatggtgttcctatatatagacattagtttgag 169  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  6334 gagtacaatagtgttcctatatatagagattagtttgag 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 39325 - 39281
Alignment:
Q  58 taagaatactcatgtgggagatattcatagaaactcattgtagaa 102  Q
    ||||| ||||||||||||||||| ||||| ||||||||| |||||    
T  39325 taagagtactcatgtgggagatactcataaaaactcattatagaa 39281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University