View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_4 (Length: 719)
Name: NF17152_low_4
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 670
Target Start/End: Original strand, 40961926 - 40962564
Alignment:
| Q |
18 |
cattatgacatcagttttttatgatcttcgtcagaaaccggatgatttatggttaaatcattcaaaagtggttcacccgaaacctcataggaaggataat |
117 |
Q |
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| T |
40961926 |
cattatgacatcagttttttatgatcttcgtcagaaaccggatgatttatggctaaatcattcaaaagtggttcacccgaaacctcataggaaggataat |
40962025 |
T |
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| Q |
118 |
gatgcttggagagcaatccaaaaggtattattttcccatttgaacgaatttcttgttatttattgtttatgttagctgagta---aatatttaggatttt |
214 |
Q |
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| T |
40962026 |
gatgcttggagagcaatccaaaaggtattattttcccatttgaacgaatttcttgttatttattgtttatgttagctgagtaaataatatttaggatttt |
40962125 |
T |
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| Q |
215 |
attttacaatatggttacagacaacactatggttttgcagatcatcgaaaatggagaacagataagcctaaagcactttaggccaattaaacctttggga |
314 |
Q |
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| T |
40962126 |
attttacaccatggttacacacaacactatggttttgcagatcatcgaaaatggagaacagataagcctaaagcactttaggccaattaaacctttggga |
40962225 |
T |
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| Q |
315 |
tctggagataccggaaggtttattgtttttctctttttctccttagttctcttttccaagtacaaactacatacatgtccatgatattgtcacttccagt |
414 |
Q |
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| T |
40962226 |
tctggagataccggaaggtttattttttt-----------------ttctcttttccaagtacaaactacatacatgtccatgatattgtcacttctagt |
40962308 |
T |
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| Q |
415 |
gattctacaatttccttaatggaacttgtgaatatataaacgccttatcaatgaattggtctctacttagatgaaaattcaagtgagcttgagattttat |
514 |
Q |
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| T |
40962309 |
aattctacaatttccttaatggaacttgtgaatatataaacgccttatcaatgaattggtctctacttagatgaaaattcaagtgagcttgagattttat |
40962408 |
T |
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| Q |
515 |
aatacatttcactggaatactccttcgggactgatatgatatgttattggctttcagtgtgcatctggtggagctagaaggaactggtcaatacttcgca |
614 |
Q |
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| T |
40962409 |
aatacatttcactggaatactccttcgggactgatatgatatgttatcggctttcagtgtgcatctggtggagctagaaggaactggtcaatacttcgca |
40962508 |
T |
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| Q |
615 |
atgaaggctatggataagggagttatgctcaatcgcaataaggttctgagtttgat |
670 |
Q |
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| T |
40962509 |
atgaaggctatggataagggtgttatgctcaatcgcaataaggttctgagtttgat |
40962564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 22797067 - 22797166
Alignment:
| Q |
48 |
tcagaaaccggatgatttatggttaaatcattcaaaagtggttcacccgaaacctcataggaaggataatgatgcttggagagcaatccaaaaggtatta |
147 |
Q |
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| T |
22797067 |
tcagaaaccagaagatctatggatgaatcattcaaaagtggttcaccctaaacctcataggagggatgatgctgcttggagagctattcagaaggtatta |
22797166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 22797873 - 22797940
Alignment:
| Q |
243 |
atggttttgcagatcatcgaaaatggagaacagataagcctaaagcactttaggccaattaaaccttt |
310 |
Q |
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| T |
22797873 |
atggttttgcagatcatggagagtggagaacagataggcttgaagcattttaagccaattaaaccttt |
22797940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 658
Target Start/End: Original strand, 22798227 - 22798317
Alignment:
| Q |
568 |
tcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggt |
658 |
Q |
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| T |
22798227 |
tcagtgtccatcttgtggagctatgtggaactgatcaacattttgccatgaaggctatggagaaggctgttatgctcaaccgtaataaggt |
22798317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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