View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_40 (Length: 394)
Name: NF17152_low_40
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 176 - 378
Target Start/End: Complemental strand, 37246069 - 37245868
Alignment:
| Q |
176 |
gagataccttctttcaatttcatcccaacattnnnnnnncattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatga |
275 |
Q |
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| T |
37246069 |
gagatacattctttcaatttcatcccgacat-caaaaaacattctcaatgaaaacaattgactgtgaaatttaaggactcgcgaaatttgcaatccatga |
37245971 |
T |
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| Q |
276 |
gtgaatcaaaatattgcatcgttcccaagctcgacgatttggaatttggatcaagaagcacaagaactataatgcttccatcaacgaacttaaacttgtt |
375 |
Q |
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| T |
37245970 |
gtgaatcaaaatattgcatcgttcccaagcttgacgatttggaatttggatcaagacgcacaagaactataatgcttccatcaacgaacttaaacttgtt |
37245871 |
T |
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| Q |
376 |
ctt |
378 |
Q |
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||| |
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| T |
37245870 |
ctt |
37245868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37246151 - 37246070
Alignment:
| Q |
1 |
atatggaagcttttttatgtctagcaaaattaaatgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
82 |
Q |
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| T |
37246151 |
atatggaagcttttttatgtctagcaaaatcacatgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
37246070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 4261313 - 4261157
Alignment:
| Q |
215 |
cattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatgagtgaatcaaaatattgcatcgttcccaagctcgacgatt |
314 |
Q |
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| T |
4261313 |
cattctcaatgaaaacgattgattgtgcaatttgaggactcgccagattaggaatccaagaatgaatcaagttattacatcgttcccaagcctaacgatt |
4261214 |
T |
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| Q |
315 |
tggaatttggatcaagaagcacaagaactataatgcttccatcaacgaacttaaacttgttctt |
378 |
Q |
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|||| || ||||| |||||||| |||||||||||||||||||| |||||||||||| |
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| T |
4261213 |
tgga-------tcgagaagtgcaagaactggaatgcttccatcaacgaactgaaacttgttctt |
4261157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 27664555 - 27664523
Alignment:
| Q |
274 |
gagtgaatcaaaatattgcatcgttcccaagct |
306 |
Q |
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| T |
27664555 |
gagtgaatcaaaatattgcatcgttcccaagct |
27664523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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