View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_43 (Length: 383)
Name: NF17152_low_43
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 153642 - 153268
Alignment:
| Q |
1 |
aaatcaaaaccagttagaacttaaaattaaactaatgacataccatgacaaagagggtagatggtgccactatcgaatgtgcatcaatgcccttgaggta |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||| ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
153642 |
aaatcaaaaccagtttgaacttaaaagtaaagtaattacataccttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggta |
153543 |
T |
|
| Q |
101 |
tgcctacccctctggtatgccagagccaccatctgcaggagcaatgtaagcacacagggctgcagcaccaacccctaaaatcatgttacaaccaacgtac |
200 |
Q |
| |
|
||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
153542 |
tgccttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgccgcaccaacccctaaaatcatgttacaaccaacgtac |
153443 |
T |
|
| Q |
201 |
actgcaaatgcctcatggtacttttgcttgagcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
153442 |
actgcaaatgcctcatggtacttttgcttgagcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacc |
153343 |
T |
|
| Q |
301 |
caacaagtcctgtaattaaaccaataagaagtgcaggggtccacttcagaacaacatattggtatatctcaacct |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
153342 |
caacaagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacct |
153268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 56471562 - 56471666
Alignment:
| Q |
231 |
agcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaa |
330 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
56471562 |
agcatgagatggttggtgaggagaagcttgaaaccagcaatattctcaacaccaatgttattgaagaaggcgacaagacctgtgcctaaaccaataagaa |
56471661 |
T |
|
| Q |
331 |
gtgca |
335 |
Q |
| |
|
||||| |
|
|
| T |
56471662 |
gtgca |
56471666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University