View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_44 (Length: 379)
Name: NF17152_low_44
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 168 - 368
Target Start/End: Original strand, 10295984 - 10296184
Alignment:
| Q |
168 |
taacatgtggattctgacatattgtccttatttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatattagggc |
267 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10295984 |
taacatgtggtttgtgacatattgtccttatttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatattagggc |
10296083 |
T |
|
| Q |
268 |
caactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggtatagtat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10296084 |
caactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggtatagtat |
10296183 |
T |
|
| Q |
368 |
a |
368 |
Q |
| |
|
| |
|
|
| T |
10296184 |
a |
10296184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 159 - 368
Target Start/End: Original strand, 10303322 - 10303531
Alignment:
| Q |
159 |
agtgatttttaacatgtggattctgacatattgtccttatttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaaga |
258 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
10303322 |
agtgatttttaacgtgtggattgtgacatattgttcttatttgttcagggaactattacatctgccattaattatgcagtcatgtgttggagcaacaaga |
10303421 |
T |
|
| Q |
259 |
tattagggccaactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaag |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10303422 |
tattagggccaactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaag |
10303521 |
T |
|
| Q |
359 |
gtatagtata |
368 |
Q |
| |
|
|||||||||| |
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|
| T |
10303522 |
gtatagtata |
10303531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 10287630 - 10287834
Alignment:
| Q |
164 |
tttttaacatgtggattctgacatattgtccttatttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatatta |
263 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |
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| T |
10287630 |
tttttaacatgtggattgtgacatattgtccttatttgctcagggaattattacatctgcatttagttatggagtcatcagttggagcaacaagatatta |
10287729 |
T |
|
| Q |
264 |
gggccaactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggtata |
363 |
Q |
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|||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10287730 |
gggccaactctggttgccctttacgttccacttcaacccgcatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggtata |
10287829 |
T |
|
| Q |
364 |
gtata |
368 |
Q |
| |
|
||||| |
|
|
| T |
10287830 |
gtata |
10287834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 10295091 - 10295249
Alignment:
| Q |
1 |
ctgtgacagcattttcattcttctttggcgttgtactaatggcgatagtttcgttattcatgactaatttatcatctgactggattttgacacaatcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
10295091 |
ctgtgacagcattttcattcttctttggcgttgtactaatggcgatagtctccttattcacgactaatttgtcatctgactggattttgacacaatcaga |
10295190 |
T |
|
| Q |
101 |
aatacttgcggttgtttatgctgtgagtcactatatatgattttaaatcaatataatga |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10295191 |
aatacttgcggttgtttatgctgtgagtcactatatatgattttaaatcaatgtaatga |
10295249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 10302827 - 10302977
Alignment:
| Q |
3 |
gtgacagcattttcattcttctttggcgttgtactaatggcgatagtttcgttattcatgactaatttatcatctgactggattttgacacaatcagaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10302827 |
gtgacagcattttcattcttctttggcgttgtactaatggcgatagtctccttattcacgactaatttgtcatctgactggattttgacacaatcagaaa |
10302926 |
T |
|
| Q |
103 |
tacttgcggttgtttatgctgtgagtcactatatatgattttaaatcaatataatga |
159 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
10302927 |
tacttgcggttgtttatgctgtgagtc------tatgattttaaatcaatataatga |
10302977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 162 - 361
Target Start/End: Complemental strand, 10278958 - 10278759
Alignment:
| Q |
162 |
gatttttaacatgtggattctgacatattgtccttatttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatat |
261 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||| |||||| |||| | ||||||||||| ||||||||||| |||||| |||||||||||| |
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|
| T |
10278958 |
gatttttaacatgtggattgtgacatatttttcttatttgtttagggaactattgcttctgcctttaactatgcagtcattagttggtgcaacaagatat |
10278859 |
T |
|
| Q |
262 |
tagggccaactctggttgccctttacattccacttcaacctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggta |
361 |
Q |
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|
| |||||| || | ||| ||||||||| ||||||||||||||||||| ||||| | ||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
10278858 |
tggggccagctttagtttccctttacaatccacttcaacctggattttctgccctcttgtctcagatttttcttggaagtccaatttacttgggaaggta |
10278759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 10287160 - 10287287
Alignment:
| Q |
1 |
ctgtgacagcattttcattcttctttggcgttgtactaatggcgatagtttcgttattcatgactaatttatcatctgactggattttgacacaatcaga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||| ||| |||||||||||| ||||||| |
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|
| T |
10287160 |
ctgtgacagcatattcattcttctttggagttgtactaatggcgatagtctcgttattcatgactgatttgtcaagtgattggattttgacagaatcaga |
10287259 |
T |
|
| Q |
101 |
aatacttgcggttgtttatgctgtgagt |
128 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
10287260 |
aatacttgctgttgtttatgctgtgagt |
10287287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10279556 - 10279409
Alignment:
| Q |
1 |
ctgtgacagcattttcattcttctttggcgttgtactaatggcgatagtttcgttattcatgactaatttatcatctgactggattttgacacaatcaga |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||| || | ||| ||||||||||||||||||| |||| |
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|
| T |
10279556 |
ctgtaacagcatattcattcttctttggagttgtactaatggcgatagtctcgctattcatgactgatctgtcaagtgactggattttgacacaaccaga |
10279457 |
T |
|
| Q |
101 |
aatacttgcggttgtttatgctgtgagtcactatatatgattttaaatcaat |
152 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10279456 |
aatacttgctgttgtttatgctgtgagtcac----tatgattttaaatcaat |
10279409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 10264122 - 10263953
Alignment:
| Q |
199 |
ttgttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatattagggccaactctggttgccctttacattccacttca |
298 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| |||| | |||| | ||| | |||||||||||||||||| || |||||||||| |||| ||||||||| |
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|
| T |
10264122 |
ttgttcagggaattattgcatctgcccttaactatggactcattacatggtgtaacaagatattagggccagctttggttgccctatacaatccacttca |
10264023 |
T |
|
| Q |
299 |
acctggatttgctgccatattgtctcagatattccttggaagtccaatttacttgggaaggtatagtata |
368 |
Q |
| |
|
||||| ||| ||||| || |||||| ||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10264022 |
acctgctttttctgccctactgtctcggatgttccttggtagtccaatttacttgggaaggtatagtata |
10263953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 10265320 - 10265243
Alignment:
| Q |
51 |
tcgttattcatgactaatttatcatctgactggattttgacacaatcagaaatacttgcggttgtttatgctgtgagt |
128 |
Q |
| |
|
||||| || ||||||||| ||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
10265320 |
tcgtttttaatgactaatgagtcaactgactggagtttgacatcttcagaaatacttgctgttatttatgctgtgagt |
10265243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 30584280 - 30584382
Alignment:
| Q |
202 |
ttcagggaagtattacatctgcctttaattatgcagtcatgagttggagcaacaagatattagggccaactctggttgccctttacattccacttcaacc |
301 |
Q |
| |
|
||||||||| |||| |||||||| |||| |||| | |||| | |||||||||||||| || || ||| | ||||||||||||| | |||||||||||| |
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|
| T |
30584280 |
ttcagggaattattgcatctgcccttaactatggaatcatcacatggagcaacaagatcttgggcccagccatggttgccctttataatccacttcaacc |
30584379 |
T |
|
| Q |
302 |
tgg |
304 |
Q |
| |
|
||| |
|
|
| T |
30584380 |
tgg |
30584382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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