View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_45 (Length: 378)
Name: NF17152_low_45
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 151 - 378
Target Start/End: Complemental strand, 35478546 - 35478319
Alignment:
| Q |
151 |
atcaaaatccatgttttaatctattataaaagctactaaactatgttgagtatagagtgagcgagtggaggaagtcacccatcgtgctcagattttaaga |
250 |
Q |
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| T |
35478546 |
atcaaaatccatgttttgatctattataaaagctactaaactatgttgagtatacagtgagcgagtggaggaagtcgcccatcgtgctcagattttaaga |
35478447 |
T |
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| Q |
251 |
aattaagagaaattgagtgcatatatactacacaaattgattaatgttagttttttcttccgaaattaaaaaagttagatgagttgagtgactaaggttt |
350 |
Q |
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| T |
35478446 |
aattaaaagaaattgagtgcatatatgctacacaaattgattaatgttagttttttcttccgaaattaaaaaagttagatgagtggagtggctaaggttt |
35478347 |
T |
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| Q |
351 |
tacaagcaacaacccaaattcttagaga |
378 |
Q |
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| T |
35478346 |
tacgaacaacaacccaaattcttagaga |
35478319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 35478685 - 35478567
Alignment:
| Q |
9 |
agtgagatgaaatcaaataacacattttgatcttgatgtgaaagcgttttcgtttaatattgcgatgtaaaaaatacgcatcattaagctggaaactgat |
108 |
Q |
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| T |
35478685 |
agtgaaatgaaatcaaataacacattttgatcttgatgcgaaagtgttttcgtttaatattgcgatgtaaaaaatacgcatcattaagctggaaactgat |
35478586 |
T |
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| Q |
109 |
ttgatcgtccttgctttga |
127 |
Q |
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| T |
35478585 |
ttgattgtccttgctttga |
35478567 |
T |
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