View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_46 (Length: 374)

Name: NF17152_low_46
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_46
NF17152_low_46
[»] chr7 (10 HSPs)
chr7 (13-355)||(22801475-22801817)
chr7 (13-194)||(22868350-22868534)
chr7 (281-351)||(5937423-5937493)
chr7 (281-349)||(1885562-1885630)
chr7 (281-322)||(48438636-48438677)
chr7 (207-250)||(9037665-9037708)
chr7 (281-316)||(25956467-25956502)
chr7 (286-328)||(2144546-2144588)
chr7 (235-312)||(24339668-24339745)
chr7 (292-328)||(2143866-2143902)
[»] chr4 (9 HSPs)
chr4 (208-351)||(37496691-37496834)
chr4 (281-337)||(44362667-44362723)
chr4 (281-328)||(13307887-13307934)
chr4 (222-316)||(11797571-11797665)
chr4 (281-337)||(13117430-13117486)
chr4 (208-256)||(13484079-13484127)
chr4 (264-327)||(22799878-22799941)
chr4 (263-324)||(847965-848026)
chr4 (235-324)||(30982834-30982923)
[»] chr5 (10 HSPs)
chr5 (222-351)||(30080444-30080573)
chr5 (281-349)||(10010543-10010611)
chr5 (285-351)||(26205766-26205832)
chr5 (236-312)||(21542056-21542132)
chr5 (281-351)||(19167578-19167649)
chr5 (263-337)||(21319929-21320003)
chr5 (235-312)||(7677731-7677808)
chr5 (283-352)||(24906305-24906374)
chr5 (306-346)||(309150-309190)
chr5 (292-328)||(42192286-42192322)
[»] chr1 (6 HSPs)
chr1 (248-351)||(18946003-18946106)
chr1 (281-346)||(40176595-40176660)
chr1 (285-346)||(24176811-24176873)
chr1 (289-343)||(24462280-24462334)
chr1 (235-312)||(47989523-47989600)
chr1 (281-337)||(14332410-14332465)
[»] chr2 (12 HSPs)
chr2 (281-351)||(43586007-43586077)
chr2 (285-352)||(13501084-13501151)
chr2 (281-345)||(14373429-14373493)
chr2 (226-328)||(24067263-24067365)
chr2 (281-345)||(44984652-44984716)
chr2 (289-352)||(11439781-11439844)
chr2 (281-328)||(14450797-14450844)
chr2 (281-335)||(33884054-33884108)
chr2 (281-325)||(8300221-8300265)
chr2 (285-337)||(10535765-10535817)
chr2 (281-337)||(18512144-18512200)
chr2 (281-341)||(18570969-18571029)
[»] chr8 (7 HSPs)
chr8 (281-355)||(42874505-42874579)
chr8 (222-339)||(27733846-27733963)
chr8 (285-351)||(26915246-26915312)
chr8 (285-328)||(31119097-31119140)
chr8 (206-351)||(10497743-10497888)
chr8 (281-351)||(24295139-24295209)
chr8 (285-337)||(34073984-34074036)
[»] chr6 (14 HSPs)
chr6 (281-350)||(19369805-19369874)
chr6 (281-333)||(6751884-6751936)
chr6 (287-337)||(10031571-10031621)
chr6 (208-318)||(785384-785494)
chr6 (285-343)||(5579649-5579707)
chr6 (235-312)||(16766723-16766800)
chr6 (281-316)||(26402682-26402717)
chr6 (303-345)||(32297976-32298018)
chr6 (235-312)||(8365475-8365552)
chr6 (283-324)||(10157998-10158039)
chr6 (262-351)||(21395291-21395379)
chr6 (292-345)||(34868170-34868223)
chr6 (281-337)||(1334662-1334718)
chr6 (281-333)||(22745962-22746014)
[»] chr3 (4 HSPs)
chr3 (281-344)||(49179717-49179780)
chr3 (281-333)||(14338485-14338537)
chr3 (209-256)||(34834869-34834916)
chr3 (292-346)||(34409355-34409409)
[»] scaffold0024 (1 HSPs)
scaffold0024 (281-351)||(18110-18180)
[»] scaffold0314 (2 HSPs)
scaffold0314 (281-338)||(8948-9005)
scaffold0314 (222-256)||(9017-9051)
[»] scaffold0504 (1 HSPs)
scaffold0504 (261-328)||(8679-8746)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 22801475 - 22801817
Alignment:
Q  13 aatatcatttcattatcttgcttttggtatgaacattcccttaattggggaatgacaaaattgtttgtaaagacggcgctcacactttgatgaagtgggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22801475 aatatcatttcattatcttgcttttggtatgaacattcccttaattggggaatgacaaaattgtttgtaaagacggcgctcacactttgatgaagtgggt 22801574  T
Q  113 attgtcacttcaacggtgcaggtggaagcacaatccttcactttttcctaattccctataatggatgcttgatccttaagatcaccacttgtaagctctg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22801575 attgtcacttcaacggtgcaggtggaagcacaatccttcactttttcctaattccctataatggatgcttgatccttaagatcaccacttgtaagctctg 22801674  T
Q  213 ttgcaccagcacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22801675 ttgcaccagcacttctgattgaaggcgtgtcccagtgtccgacaagtgtggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 22801774  T
Q  313 cattatctcaaaatttgatcggtgttgacgtgtccgtgttagt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22801775 cattatctcaaaatttgatcggtgttgacgtgtccgtgttagt 22801817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 22868350 - 22868534
Alignment:
Q  13 aatatcatttcattatcttgcttttggtatgaacattcccttaattggggaatgacaaaattgtttgtaaagacggc--gctcacactttgatgaagtgg 110  Q
    |||||||||| | | |||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||  | ||||||||| |||||| ||    
T  22868350 aatatcattttaatctcttgcttttggtatgaacatttccttaattggggaataagaaaattgtttggaaagacagcttgatcacactttcatgaagagg 22868449  T
Q  111 gtattgtcacttcaacggtgca-ggtggaagcacaatccttcactttttcctaattccctataatggatgcttgatccttaagat 194  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||    
T  22868450 gtattgtcacttcaacggtgcacgatggaagcacaatccttcactttttccttattccctataatggatgcgtggtcctttagat 22868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 5937423 - 5937493
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  5937423 acacagacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgt 5937493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 1885630 - 1885562
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgt 349  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||| ||| |||| || ||||||||    
T  1885630 acaccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgt 1885562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 48438677 - 48438636
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctca 322  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  48438677 acaccgacatgtgtgattacagtgaattatgtcattatctca 48438636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 9037665 - 9037708
Alignment:
Q  207 gctctgttgcaccagcacttctgattgaaggcgtgtcccagtgt 250  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||    
T  9037665 gctctcttgcaccaacacttctgattgaaggcttgtcccagtgt 9037708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 25956502 - 25956467
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcatt 316  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25956502 acaccgacacttgtgattacattgaattatgtcatt 25956467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 2144546 - 2144588
Alignment:
Q  286 gacacttgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    ||||| |||||||||| |||||||||||||| |||||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattt 2144588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 24339745 - 24339668
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    ||||||||||| ||||| || | |||  ||||| ||||| ||||  |||||||||||||| |||||| ||||||||||    
T  24339745 aggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 24339668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  292 tgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    |||||||||| |||||||||||||| |||||||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 37496834 - 37496691
Alignment:
Q  208 ctctgttgcaccagcacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaat 307  Q
    |||||||||||   ||||| |||||||||||||||||| |||||||||| |||  ||||| | ||  ||||  ||||||||||||||||||||| |||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaat 37496735  T
Q  308 tatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||||| ||||||||  | ||||||||  ||||||| ||||    
T  37496734 tatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgt 37496691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 44362723 - 44362667
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    ||||| ||||||||||||||| | |||||||||||| ||||||||||| ||||||||    
T  44362723 acaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 44362667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 13307934 - 13307887
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  13307934 acaccaacacttgtgattacattgaattatgtcattttctcaaaattt 13307887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 11797571 - 11797665
Alignment:
Q  222 cacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcatt 316  Q
    |||||||||| ||| |||||||||||| ||| ||| |||   |||| ||||  ||||  ||||||||||||||||||||| | ||||||||||||    
T  11797571 cacttctgatcgaaagcgtgtcccagtatccaacacgtgttatgtctgacaacgacacaacaccgacacttgtgattacattaaattatgtcatt 11797665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 13117486 - 13117430
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    ||||||||||||||||||||| |||||| ||||||| |||| |||||| || |||||    
T  13117486 acaccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgt 13117430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 13484127 - 13484079
Alignment:
Q  208 ctctgttgcaccagcacttctgattgaaggcgtgtcccagtgtccgaca 256  Q
    ||||||||||||| |||||||||||||| || ||| |||||||||||||    
T  13484127 ctctgttgcaccaacacttctgattgaatgcatgttccagtgtccgaca 13484079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 22799878 - 22799941
Alignment:
Q  264 tgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaatt 327  Q
    |||| ||||||||||  |||| ||||| |||||||||| |||||||||||||| ||| ||||||    
T  22799878 tgtccgacactgacacgacactgacacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 848026 - 847965
Alignment:
Q  263 gtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaa 324  Q
    ||||| |||||  |||| |||||||||||||| |||| |||||||||||| ||| |||||||    
T  848026 gtgtccgacaccaacaagacaccgacacttgtaattatagtgaattatgtaattttctcaaa 847965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 30982834 - 30982923
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaa 324  Q
    ||||||||||| ||||| |||| |||  ||||| ||||| ||||  |||||||||||| | |||||| |||| ||||| ||| |||||||    
T  30982834 aggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaa 30982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 30080444 - 30080573
Alignment:
Q  222 cacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctc 321  Q
    ||||||| |||||||| ||||||| |||||||||| |||   |||| |||||| |||  ||||||| ||||||||||||| |||||||||||||| ||||    
T  30080444 cacttctaattgaaggagtgtcccggtgtccgacatgtgtcatgtccgacactaacaccacaccgatacttgtgattacattgaattatgtcattttctc 30080543  T
Q  322 aaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||| ||| |||| ||| | |||||||    
T  30080544 aaaattttatcagtgtcgacatttccgtgt 30080573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 10010611 - 10010543
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgt 349  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||||| ||  ||||||| ||||||||    
T  10010611 acaccgacacatgtgattacaatgaattatgtcattttttcaaaattttattagtgttgaggtgtccgt 10010543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 26205766 - 26205832
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    |||||| | |||||||| |||||||||||||| ||||||||||| |||||| | |||||||| ||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgt 26205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 21542132 - 21542056
Alignment:
Q  236 ggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    |||||||||| ||||| |||| |||  ||||| ||||| ||||  |||||||||||||| |||||| ||||||||||    
T  21542132 ggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 19167578 - 19167649
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtca-ttatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||||||||||||||||| |||||| ||||| || | ||||||||| ||||||||  ||||||| ||||    
T  19167578 acaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgt 19167649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 21319929 - 21320003
Alignment:
Q  263 gtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    ||||| ||||| ||||  ||| ||||||||||||||||| |||||||| ||||| | ||||||||| ||| ||||    
T  21319929 gtgtccgacaccgacatgacatcgacacttgtgattacattgaattatatcattttttcaaaattttatccgtgt 21320003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 7677808 - 7677731
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    ||||||||||| ||||| |||| |||  ||||||||||| ||||  |||||||||||| | ||| || ||||||||||    
T  7677808 aggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaattatgt 7677731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 24906305 - 24906374
Alignment:
Q  283 accgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgtt 352  Q
    |||||||||||| |||||| |||||||||||||| | ||||| | | ||| |||||| |||||| |||||    
T  24906305 accgacacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgtt 24906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 309190 - 309150
Alignment:
Q  306 attatgtcattatctcaaaatttgatcggtgttgacgtgtc 346  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtcgacgtgtc 309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 42192322 - 42192286
Alignment:
Q  292 tgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    |||||||||| |||||||||||||| |||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattt 42192286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 18946003 - 18946106
Alignment:
Q  248 tgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtcc 347  Q
    ||||||||| |||  ||||||||||| ||||||||||  ||||| ||||||||| |||||||||||||| |||||||||||||  ||||| |||| ||||    
T  18946003 tgtccgacacgtgtcgtgtcagacaccgacaatacactcacactcgtgattacattgaattatgtcattttctcaaaatttgactggtgtcgacgggtcc 18946102  T
Q  348 gtgt 351  Q
    ||||    
T  18946103 gtgt 18946106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 40176660 - 40176595
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtc 346  Q
    |||| ||||| |||||||||| ||||| | |||||| ||||||||||| |||||||||||||||||    
T  40176660 acactgacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtgtc 40176595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 24176873 - 24176811
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattat-ctcaaaatttgatcggtgttgacgtgtc 346  Q
    ||||||||||||||||| | ||| |||||||| | |||||||||| |||||||||||||||||    
T  24176873 cgacacttgtgattacattaaatcatgtcatttttctcaaaattttatcggtgttgacgtgtc 24176811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 24462280 - 24462334
Alignment:
Q  289 acttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgt 343  Q
    ||||||||||||| |||||||||||||| | ||||||||||||| |||| |||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgacgt 24462334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 47989600 - 47989523
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    |||||||||||  |||| |||| |||  ||||| ||||| ||||  |||||||||||||| |||||| ||||||||||    
T  47989600 aggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 47989523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 14332465 - 14332410
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    |||||||||  |||||||||| |||||||||||||| |||| |||||| ||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctc-aaattttatcggtgt 14332410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 43586007 - 43586077
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  43586007 acaccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagtgt 43586077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 13501084 - 13501151
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgtt 352  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| || || |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgtt 13501151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 14373429 - 14373493
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgt 345  Q
    |||||||||| |||||||||| ||||||||||||||   ||||||||| || |||||||||||||    
T  14373429 acaccgacacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgttgacgtgt 14373493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 24067365 - 24067263
Alignment:
Q  226 tctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaa 325  Q
    ||||||||||||| ||||  ||||| || || |||  ||||| ||||| ||||  | ||| ||||||||||||||| |||||||||||||| || |||||    
T  24067365 tctgattgaaggcatgtcttagtgttcggcacgtgttgtgtccgacaccgacatgaaaccaacacttgtgattacattgaattatgtcattttcacaaaa 24067266  T
Q  326 ttt 328  Q
    |||    
T  24067265 ttt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 44984652 - 44984716
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgt 345  Q
    |||| |||||||||||| ||| |||||||| ||||| | |||||||||||| ||||| |||||||    
T  44984652 acacggacacttgtgatcacattgaattatatcattttttcaaaatttgataggtgtcgacgtgt 44984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 11439844 - 11439781
Alignment:
Q  289 acttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgtt 352  Q
    ||||||||||||| |||||||||| ||| ||||| ||||| |||| | |||||||||| |||||    
T  11439844 acttgtgattacactgaattatgttattttctcataattttatcgattttgacgtgtcagtgtt 11439781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 14450797 - 14450844
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    |||| |||||||||||||||| |||||||||| ||| |||||||||||    
T  14450797 acactgacacttgtgattacattgaattatgtgattttctcaaaattt 14450844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 33884108 - 33884054
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggt 335  Q
    |||||||||||||| |||||| ||||| |||||||| ||||| ||||| ||||||    
T  33884108 acaccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 8300221 - 8300265
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaa 325  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||    
T  8300221 acaccgacacttatgattacactaaattatgtcattttctcaaaa 8300265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 10535765 - 10535817
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    |||||||| |||||||| |||||||||||||| ||||||| | | ||||||||    
T  10535765 cgacacttatgattacactgaattatgtcattttctcaaattattatcggtgt 10535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 18512144 - 18512200
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    |||| ||||| |||||||||| |||||||| | ||| ||||||||||| ||||||||    
T  18512144 acactgacacatgtgattacattgaattatattattttctcaaaattttatcggtgt 18512200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 18571029 - 18570969
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgac 341  Q
    |||| ||||| | |||||||| |||||||||||||| ||||||| | | ||||||||||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttgac 18570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 42874579 - 42874505
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgttagt 355  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||| | | |||||| |||||||||||||||||    
T  42874579 acactgacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgttagt 42874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 27733963 - 27733846
Alignment:
Q  222 cacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctc 321  Q
    ||||||||||||||||||||| |  |||||||||||||   ||||| |   | ||||  ||||| ||||||||||||||| |||||||| ||||| ||||    
T  27733963 cacttctgattgaaggcgtgttcgggtgtccgacaagtattgtgtcggtgtccgacatgacaccaacacttgtgattacattgaattatatcattttctc 27733864  T
Q  322 aaaatttgatcggtgttg 339  Q
    ||||||| ||||||||||    
T  27733863 aaaattttatcggtgttg 27733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 26915246 - 26915312
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||||||||||||| | |||||||||||| ||||||||||| ||| |||| |||||||||||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgt 26915312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    ||||||||||||||||| |||||||||||||| |||||||||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 351
Target Start/End: Original strand, 10497743 - 10497888
Alignment:
Q  206 agctctgttgcaccagcacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtga 305  Q
    ||||||||||||| | ||| |||||||||||||||||||| ||||  |||| ||    |||  ||||| ||||  | || ||||||||||||||||   |    
T  10497743 agctctgttgcacgaacacctctgattgaaggcgtgtcccggtgtttgacatgtattatgttcgacaccgacacgatactgacacttgtgattacatcaa 10497842  T
Q  306 attatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||| ||| ||||||||||| ||| |||| | |||||| ||||    
T  10497843 attatgttattttctcaaaattttatccgtgtcggcgtgtctgtgt 10497888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 24295139 - 24295209
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||||||||||||||||||| | |||| ||||||| ||||| ||||| |||| ||| ||| |||| ||||    
T  24295139 acaccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacatgtcagtgt 24295209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 34073984 - 34074036
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    |||||||| |||||||| | |||||||||||| | ||||||||| ||||||||    
T  34073984 cgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgt 34074036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 19369874 - 19369805
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtg 350  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||  |||||||||||    
T  19369874 acaccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtccgtg 19369805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 6751884 - 6751936
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcg 333  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  6751884 acaccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 10031621 - 10031571
Alignment:
Q  287 acacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 10031571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 785384 - 785494
Alignment:
Q  208 ctctgttgcaccagcacttctgattgaaggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaat 307  Q
    |||||||||||   |||||||||||||||| ||||||  ||||||||||       |||  ||||| ||||  ||||||||||||||||||||| |||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgattacattgaat 785483  T
Q  308 tatgtcattat 318  Q
    |||||||||||    
T  785484 tatgtcattat 785494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 5579707 - 5579649
Alignment:
Q  285 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgt 343  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||| |||||||| |||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcgacgt 5579649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 16766800 - 16766723
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    ||||||||||| ||||| |||| |||  ||||| ||||| ||||  |||||||||||||| |||||| ||||||||||    
T  16766800 aggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 16766723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 26402682 - 26402717
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcatt 316  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26402682 acaccgacacttgtgattacactgaattatgtcatt 26402717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 32298018 - 32297976
Alignment:
Q  303 tgaattatgtcattatctcaaaatttgatcggtgttgacgtgt 345  Q
    |||||||| ||||| |||||||||||||||||||| |||||||    
T  32298018 tgaattatatcattttctcaaaatttgatcggtgtcgacgtgt 32297976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 8365475 - 8365552
Alignment:
Q  235 aggcgtgtcccagtgtccgacaagtgcggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgt 312  Q
    ||||||||||||||||| |||| |||  ||||| || || ||||  |||||||||||||| ||||||  |||||||||    
T  8365475 aggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgt 8365552  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 10158039 - 10157998
Alignment:
Q  283 accgacacttgtgattacagtgaattatgtcattatctcaaa 324  Q
    |||||||| |||||||||| |||||||||||||| |||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaa 10157998  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 21395291 - 21395379
Alignment:
Q  262 ggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    |||||| ||||||||||  |||||||||||||| |||||| | |||||||| ||| ||||||| | | | |||||||| |||||| ||||    
T  21395291 ggtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt-attttctcaaattattagcggtgttggcgtgtcggtgt 21395379  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 34868170 - 34868223
Alignment:
Q  292 tgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgt 345  Q
    |||||||||| |||||||||  ||| ||||||||||| |||||||| |||||||    
T  34868170 tgtgattacattgaattatgatattctctcaaaattttatcggtgtcgacgtgt 34868223  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 1334718 - 1334662
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 337  Q
    ||||||||| ||||||||||| ||||||||||| || | ||||||||| ||| ||||    
T  1334718 acaccgacatttgtgattacattgaattatgtccttttttcaaaattttatccgtgt 1334662  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 22746014 - 22745962
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcg 333  Q
    ||||||||||||||||||||| |||| |||  |||| ||||||||||| ||||    
T  22746014 acaccgacacttgtgattacattgaaatataacattttctcaaaattttatcg 22745962  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 49179717 - 49179780
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtg 344  Q
    |||||||||||||||||||||  ||||||||||| | ||||||||||| |||||||| ||||||    
T  49179717 acaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcgacgtg 49179780  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 14338485 - 14338537
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcg 333  Q
    ||||||||| ||||||||||| |||||||||||||| | ||||||||| ||||    
T  14338485 acaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 34834869 - 34834916
Alignment:
Q  209 tctgttgcaccagcacttctgattgaaggcgtgtcccagtgtccgaca 256  Q
    ||||||||||   |||||||||||||||||||||||| ||||||||||    
T  34834869 tctgttgcacggacacttctgattgaaggcgtgtcccggtgtccgaca 34834916  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 34409355 - 34409409
Alignment:
Q  292 tgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtc 346  Q
    |||||||||| |||||||||||||| |||| || | | |||||||||||||||||    
T  34409355 tgtgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtgtc 34409409  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 18110 - 18180
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 351  Q
    ||||| ||||||| ||||||| |||||||||| ||| ||||||||||| |||||||| |||||||| ||||    
T  18110 acaccaacacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgt 18180  T

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Target: scaffold0314 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 9005 - 8948
Alignment:
Q  281 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgtt 338  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||| |||| ||||    
T  9005 acaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatcgatgtt 8948  T

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Target: scaffold0314; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 9051 - 9017
Alignment:
Q  222 cacttctgattgaaggcgtgtcccagtgtccgaca 256  Q
    |||||||||||||||||||||||| ||||||||||    
T  9051 cacttctgattgaaggcgtgtcccggtgtccgaca 9017  T

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Target: scaffold0504 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 8679 - 8746
Alignment:
Q  261 cggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctcaaaattt 328  Q
    ||||||| ||||||||||  ||| | ||||||||| ||||| ||||| |||||||| |||||||||||    
T  8679 cggtgtctgacactgacacgacaaccacacttgtggttacattgaatcatgtcattttctcaaaattt 8746  T

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