View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_47 (Length: 373)
Name: NF17152_low_47
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_47 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 16989907 - 16989553
Alignment:
| Q |
1 |
gtatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989907 |
gtatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaa |
16989808 |
T |
|
| Q |
101 |
aattcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989807 |
aattcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcat |
16989708 |
T |
|
| Q |
201 |
aaaacgataccgcaagagctgaaaaagttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggttttgggcaacacagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16989707 |
aaaacgataccgcaagagctgaaaaagttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggtttttggcaacacagcag |
16989608 |
T |
|
| Q |
301 |
gtaatacttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16989607 |
gtaatacttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
16989553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 355
Target Start/End: Complemental strand, 16821666 - 16821313
Alignment:
| Q |
2 |
tatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaa |
101 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||| || ||||| |||||||| | |||||||||| ||| ||||||||||||||||| ||||||||| |
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|
| T |
16821666 |
tatgagaaacgctttacttgaatctcctggtttgttagtgctagatgaaggacacataccgagaaatgaaagaagtcttatttggaaggtattgtcgaaa |
16821567 |
T |
|
| Q |
102 |
attcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcata |
201 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||| |||||| |||| || |
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|
| T |
16821566 |
attcaaacccgcaagcggatcatcctttctggaactcctttccagaacaatttcttggaactgtacaacattttgagcctagtgaagccttcgtttccta |
16821467 |
T |
|
| Q |
202 |
aaacgataccgcaagagctgaaaaagttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggttttgggcaacacagcagg |
301 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||| | | || |||||| || | | |
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| T |
16821466 |
acacgataccgcatgagctgaaaaagttttgcctgaagcaggaatataaaaaagtatctgaagaatggagttgggaagccgattatggcaactcaacctg |
16821367 |
T |
|
| Q |
302 |
taatacttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |
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|
| T |
16821366 |
taatccttccgaccataagatcaaacagttaaaattgcttatggatccatttgt |
16821313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 17005407 - 17005149
Alignment:
| Q |
26 |
tcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaaattcaaacgcgcaagcgaatcatc |
125 |
Q |
| |
|
||||||||||||||| || |||||||||||||| || ||||| ||||| ||| ||||||| | || |||||| || ||||||| || |||||||||||| |
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|
| T |
17005407 |
tcctggtttgttggtgcttgacgaaggacatacgccaagaaacaaaaaaagtggtatttggcaagttttgtcggaagttcaaacacgaaagcgaatcatc |
17005308 |
T |
|
| Q |
126 |
ctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcataaaacgataccgcaagagctgaaaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| || || |||||||||| |
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|
| T |
17005307 |
ctttctggaactcctttccagaacaacttcatggaactatacaacactttgagcttagtgaagccttcttttcctaatacgatgccacacgagctgaaaa |
17005208 |
T |
|
| Q |
226 |
agttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggtt |
284 |
Q |
| |
|
||||||||||||| |||| | ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
17005207 |
tgttttgccagaagaaggaccataaaaaagcatctaaagaatggatttgggaaccggtt |
17005149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 355
Target Start/End: Original strand, 10603967 - 10604294
Alignment:
| Q |
25 |
ctcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaaattcaaacgcgcaagcgaatcat |
124 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| ||||| |||||| ||| |||| |||||||||||||||||| || |||||| ||| ||||||||||| |
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|
| T |
10603967 |
ctcccggtttgttagttctagatgaaggacacacaccaagaaatcaaagaagtcatatttggaaggtgttgtccaagattcaagcgcagaagcgaatcat |
10604066 |
T |
|
| Q |
125 |
cctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcataaaacgataccgcaagagctgaaa |
224 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||| || |||| ||| || ||||| |||| ||||||||||| ||| |||||||||| ||||| ||| |
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|
| T |
10604067 |
cctttccggaactccattccagaacaatttctgggagctttacagcaccttaagcttagtgaagccttcttttcctaacacgataccgcctgagctaaaa |
10604166 |
T |
|
| Q |
225 |
aagttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggttttgggcaacacagcaggtaatacttctgacgataagatca |
324 |
Q |
| |
|
| |||||||| ||||||| || | ||| | ||||| | ||||||| ||||| |||| ||||||||| || | | ||||||| |||||||||| |
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|
| T |
10604167 |
agtttttgccataagcagggac---ataaatcatctaaaaagcggagttgtgaacctgtttcaggcaacacaacaagagacccttctgatgataagatca |
10604263 |
T |
|
| Q |
325 |
agcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
|| || ||||| |||| |||||||||||||| |
|
|
| T |
10604264 |
agaagctgaaaatgctaatggatccctttgt |
10604294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 16965681 - 16965429
Alignment:
| Q |
2 |
tatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaa |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||| | |||| |||||| ||||||| |||||| | | |
|
|
| T |
16965681 |
tatgagaaaggttttacttgaagctcctggtttgttggttttcgatgaaggacatacaccgagaagtgaaaaaagtcttctttggaatatgttgttggag |
16965582 |
T |
|
| Q |
102 |
attcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcata |
201 |
Q |
| |
|
|| ||||| ||| || || || ||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||| ||| |||||| |||| || |
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|
| T |
16965581 |
atccaaacaaacaaacggattatactttctggaacacctttccagaacaatttcatggaactgtacaacactctgagcttaatgaagccttcatttccta |
16965482 |
T |
|
| Q |
202 |
aaacgataccgcaagagctgaaaaagttttgccagaagcaggaacgtaaaaaa |
254 |
Q |
| |
|
| |||||| | | |||| ||||| ||||||||||||| | ||||||||||| |
|
|
| T |
16965481 |
atacgatatccctcaagctaaaaaacttttgccagaagccgaaacgtaaaaaa |
16965429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 16974624 - 16974391
Alignment:
| Q |
2 |
tatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaa |
101 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||| | ||||||||||||||||| || || |||||| ||| |||| ||||||||||||||| ||||| |
|
|
| T |
16974624 |
tatgcgaaaggttctacttaattctcctggtttgatagttctagacgaaggacacacgccaagaaatcaaagaagtcatatttggaaggtgttttcgaag |
16974525 |
T |
|
| Q |
102 |
attcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcata |
201 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||| ||||||||||| |||| ||| || |||| ||| || |||||||||| |||||||||| || |
|
|
| T |
16974524 |
cttcaaacgcagaagcgtatcatcctttccggaactccattccagaacaacttctgggagctttacagcaccttaagcttggtgaaaccttcttttccta |
16974425 |
T |
|
| Q |
202 |
aaacgataccgcaagagctgaaaaagttttgcca |
235 |
Q |
| |
|
| |||||||||| ||||| |||| |||||||| |
|
|
| T |
16974424 |
acacgataccgcctgagcttaaaagtttttgcca |
16974391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 17005139 - 17005102
Alignment:
| Q |
318 |
aagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17005139 |
aagatcaagcagttaaaattgcttatggatccctttgt |
17005102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 16965376 - 16965340
Alignment:
| Q |
319 |
agatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |
|
|
| T |
16965376 |
agatcaagcagttaaagttgcttatggatccctttgt |
16965340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 16974322 - 16974274
Alignment:
| Q |
307 |
cttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
||||||| ||| |||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
16974322 |
cttctgatgatcagatcaagaagtttaaattgctaatggatccctttgt |
16974274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 35265452 - 35265802
Alignment:
| Q |
2 |
tatgagaaaggttttacttgaaactcctggtttgttggttctagacgaaggacatacaccgagaaataaaaatagtcttatttggaaggtgttgtcgaaa |
101 |
Q |
| |
|
|||| |||||||| ||||| | ||||||| ||||| ||||||||||||||||| ||||| |||||| ||| |||| ||||||||||||||| | ||| |
|
|
| T |
35265452 |
tatgcgaaaggttctacttaattctcctgggttgttagttctagacgaaggacacacaccaagaaatcaaagaagtcatatttggaaggtgtttttgaag |
35265551 |
T |
|
| Q |
102 |
attcaaacgcgcaagcgaatcatcctttctggaactcctttccagaacaatttcttggaactatacaacactttgagcttggtgaggccttcttttcata |
201 |
Q |
| |
|
||||||| | ||||| || |||||||| |||||||| |||||||||||||||| ||| || |||| ||| || ||||| |||| ||||||||||| || |
|
|
| T |
35265552 |
cttcaaacacagaagcgtattatcctttccggaactccattccagaacaatttctgggagctttacagcaccttaagcttagtgaagccttcttttccta |
35265651 |
T |
|
| Q |
202 |
aaacgataccgcaagagctgaaaaagttttgccagaagcaggaacgtaaaaaagctcctaaagaatggagttgggaaccggttttgggcaacacagcagg |
301 |
Q |
| |
|
| || ||||||| ||||| |||| |||||||| || |||| || | ||| | ||||| |||||| ||||||||| | ||| ||||| | || | |
|
|
| T |
35265652 |
acacaataccgcctgagctaaaaagtttttgccaaaatcagggactt---aaatcatctaaaaaatggaattgggaaccagcgttgctcaacaaaacaag |
35265748 |
T |
|
| Q |
302 |
taatacttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
| ||||||| ||| |||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
35265749 |
agacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgt |
35265802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 35925144 - 35925096
Alignment:
| Q |
307 |
cttctgacgataagatcaagcagttgaaattgcttatggatccctttgt |
355 |
Q |
| |
|
||||||| ||| |||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
35925144 |
cttctgatgatcagatcaagaagtttaaattgctaatggatccctttgt |
35925096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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