View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_5 (Length: 656)
Name: NF17152_low_5
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 642; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 46628706 - 46629351
Alignment:
| Q |
1 |
ggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttttgcaatcttggctgaaaattgctcatgttgttttgttttcctatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628706 |
ggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttttgcaatcttggctgaaaattgctcatgttgttttgttttcctatttt |
46628805 |
T |
|
| Q |
101 |
tcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtcctcgaataggtccggaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628806 |
tcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtcctcgaataggtccggaat |
46628905 |
T |
|
| Q |
201 |
accaggcggaaattccttccgtgattaagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttcatgataaatcacgctccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628906 |
accaggcggaaattccttccgtgattaagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttcatgataaatcacgctccta |
46629005 |
T |
|
| Q |
301 |
tgcaatttgtttacccatgtcagaaacatggagcgatgccgatacaaaatgttttctacttagtttgtttatttttgggaagaattttactccgataaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629006 |
tgcaatttgtttacccatgtcagaaacatggagcgatgctgatacaaaatgttttctacttagtttgtttatttttgggaagaattttactccgataaaa |
46629105 |
T |
|
| Q |
401 |
agattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaaaactgatggatattgtagatggtcggagtgcatgaagt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629106 |
agattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaaaactgatggatattgtagatggtcggagtgcatgaagt |
46629205 |
T |
|
| Q |
501 |
taaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaattattatctcgcttgattcctcatgtatctgaagaatctca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629206 |
taaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaattattatctcgcttgattcctcatgtatctgaagaatctca |
46629305 |
T |
|
| Q |
601 |
agattctttgttacaggtattcaactgtgccatcccatcctctctg |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629306 |
agattctttgttacaggtattcaactgtgccatcccatcctctctg |
46629351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 83 - 626
Target Start/End: Original strand, 46636114 - 46636657
Alignment:
| Q |
83 |
gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtc |
182 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| | ||| |||| || || || ||||| |||| |
|
|
| T |
46636114 |
gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatattttcatgcaccattcgtctgatggagaccctgaattcagtc |
46636213 |
T |
|
| Q |
183 |
ctcgaataggtccggaataccaggcggaaattccttccgtgattaagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttca |
282 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| || ||| |||||||| |||| | |||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
46636214 |
ctcgaataggtcatgcataccaggcggaaattccttctgtcattgcaaaatcagaccagctttcgcttcgaatgaatcctgctgattcagaagatgttca |
46636313 |
T |
|
| Q |
283 |
tgataaatcacgctcctatgcaatttgtttacccatgtcagaaacatggagcgatgccgatacaaaatgttttctacttagtttgtttatttttgggaag |
382 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||||||| ||||| ||||||| ||||| |||||||| ||||| |||| |||||||||||||| ||||| |
|
|
| T |
46636314 |
cgataaatcactctccttttcaattgatttacccatctcagacgcatggagtgatgctgatacaaatagttttgtactaggtttgtttatttttcggaag |
46636413 |
T |
|
| Q |
383 |
aattttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaaaactgatggatattgtagat |
482 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46636414 |
aattttactcatataaaacaatttatcgagaacaaagggatgggggaaatgctttcattttactatggaaagttttacaaaactgatggatatcttagat |
46636513 |
T |
|
| Q |
483 |
ggtcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaattattatctcgcttgattcctca |
582 |
Q |
| |
|
||||| |||||| |||| ||| ||||||||||||||||| || | || |||||| | ||||| || ||| ||||| |||| ||||||||||||||||| |
|
|
| T |
46636514 |
ggtcgaagtgcaggaagaaaaaagggagaaaatgtatgataggacataacctttttgccggaccgaggcaacatgaactattgtctcgcttgattcctca |
46636613 |
T |
|
| Q |
583 |
tgtatctgaagaatctcaagattctttgttacaggtattcaact |
626 |
Q |
| |
|
||| ||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
46636614 |
tgtctctgaagaatctcaagaggctctgtcacaggtattcaact |
46636657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 83 - 626
Target Start/End: Original strand, 46617416 - 46617959
Alignment:
| Q |
83 |
gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtc |
182 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| |||||| ||||||||||| | |||||||||||| ||| ||| | || || ||||| |||| |
|
|
| T |
46617416 |
gttttgttttactatatttctttgcagatggtgtcctttaaccagaattataacgttattttcatggacgatgcatctgatagagaccctgaattcagtc |
46617515 |
T |
|
| Q |
183 |
ctcgaataggtccggaataccaggcggaaattccttccgtgattaagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttca |
282 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| || ||| |||||||| | || |||| | ||||||||||||||||||| ||||| |||| |
|
|
| T |
46617516 |
ctcgaataggtcatgcataccaggcggaaattccttctgtcattgcaaaatcagaccatctttcactccgaatgaatcctgctgattcagaagatgttca |
46617615 |
T |
|
| Q |
283 |
tgataaatcacgctcctatgcaatttgtttacccatgtcagaaacatggagcgatgccgatacaaaatgttttctacttagtttgtttatttttgggaag |
382 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||| |||||||| ||||| ||| |||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
46617616 |
cgataaatcactctcctttgcaattgatttacccatgtcagacacatggagtgatgctgatgcaaatagttttgaactaggtttgtttatttttgggaag |
46617715 |
T |
|
| Q |
383 |
aattttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaaaactgatggatattgtagat |
482 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
46617716 |
aattttactcagataaaacgattcatcgagaacaaagggatgggggaaatactttcattttactatggaaggttttacaaaactgatggatatcatagat |
46617815 |
T |
|
| Q |
483 |
ggtcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaattattatctcgcttgattcctca |
582 |
Q |
| |
|
||||| |||||| |||| ||| |||||||| |||||||| || | || |||||| | ||||| || ||| ||||| |||| ||||||||||||||||| |
|
|
| T |
46617816 |
ggtcgaagtgcaggaagaaaaaagggagaaagtgtatgataggacataacctttttgccggaccgaggcaacatgaactattgtctcgcttgattcctca |
46617915 |
T |
|
| Q |
583 |
tgtatctgaagaatctcaagattctttgttacaggtattcaact |
626 |
Q |
| |
|
||| ||||||||||||||| || || ||| |||||||||||||| |
|
|
| T |
46617916 |
tgtctctgaagaatctcaaaatgctctgtcacaggtattcaact |
46617959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 85 - 639
Target Start/End: Complemental strand, 46644221 - 46643667
Alignment:
| Q |
85 |
tttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtcct |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||||| || |||| ||| ||| | |||||||| ||||| |
|
|
| T |
46644221 |
tttgttttcctatttttcttggcagatggtgtcctttgagcagaatgattttgatactttcattgaacatgcatctgatgatgaccttgaattcagtcca |
46644122 |
T |
|
| Q |
185 |
cgaataggtccggaataccaggcggaaattccttccgtgattaagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttcatg |
284 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||| ||||| |||||||||| |||| |||||| || | ||||| |||||||| ||||| |||||| |
|
|
| T |
46644121 |
cgaatcggtcctgagtaccaggcagaaattccttctttgattgagaaatcagaccagctttcacttcgaacggatcctactgattcagaagatgttcatg |
46644022 |
T |
|
| Q |
285 |
ataaatcacgctcctatgcaatttgtttacccatgtcagaaacatggagcgatgccgatacaaaatgttttctacttagtttgtttatttttgggaagaa |
384 |
Q |
| |
|
||||||||| |||| |||||| |||| ||||| ||| | |||||| ||| || ||||| | ||| |||| |||||||||||||||||||||| |
|
|
| T |
46644021 |
ataaatcactttcctctgcaataagtttgcccatcccagtcatatggagtattgctgacacaaatagctttgtactaggtttgtttatttttgggaagaa |
46643922 |
T |
|
| Q |
385 |
ttttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaaaactgatggatattgtagatgg |
484 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46643921 |
ctttactaagataaaaagattcatagagaacaaacggatgggggaaatacttacattttactatggaaagttttacgaaactgatggatattgtagatgg |
46643822 |
T |
|
| Q |
485 |
tcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaattattatctcgcttgattcctcatg |
584 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| || ||||||||||||||| | ||| | || ||| | ||| |||||||||||||||||||||||| |
|
|
| T |
46643821 |
tcggagtgcaggaaattaaaagggagaaaatgtataatagggaagaaactttttgccggagcgaggcaacaagaactattatctcgcttgattcctcatg |
46643722 |
T |
|
| Q |
585 |
tatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatc |
639 |
Q |
| |
|
| ||||| |||||||||||| | || ||||||||||||||||||| |||| |||| |
|
|
| T |
46643721 |
tctctgacgaatctcaagatacatttttacaggtattcaactgtgacatctcatc |
46643667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 351 - 639
Target Start/End: Complemental strand, 46177305 - 46177017
Alignment:
| Q |
351 |
gttttctacttagtttgtttatttttgggaagaattttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcattttactatgg |
450 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | ||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
46177305 |
gttttctacttggtttgtttatgtttgggaagaattttattcaaataaaaagattcttagagaacaaattgatgggggagatactctcattttactatgg |
46177206 |
T |
|
| Q |
451 |
aaagttttacaaaactgatggatattgtagatggtcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttactggaccaaga |
550 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||| |||||| || | ||| ||| | |||||||||| || ||||||||||| ||||||| || |
|
|
| T |
46177205 |
agagttttacaaaactgaaggatatcgtagatggtcgaagtgcaggaggaaaaaaggggggaaatgtatgacaggacagaaactttttgctggaccgagg |
46177106 |
T |
|
| Q |
551 |
caagatgaattattatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatc |
639 |
Q |
| |
|
||| | ||| | || |||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
46177105 |
caacaagaacttttgtctcgcttgattactcatgtctctgaagaatcgcaagatactttgttacaggtattcaactgtgccatctcatc |
46177017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46616522 - 46616574
Alignment:
| Q |
1 |
ggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttt |
53 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46616522 |
ggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaatttt |
46616574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46644598 - 46644544
Alignment:
| Q |
1 |
ggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttttg |
55 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
46644598 |
ggtaaccatgttgaagtaagggttttcatttttcagatcatattgccaatttttg |
46644544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 341 - 628
Target Start/End: Complemental strand, 15770362 - 15770075
Alignment:
| Q |
341 |
gatacaaaatgttttctacttagtttgtttatttttgggaagaattttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcat |
440 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| | || |||||| |||||||||||||||| |||| |
|
|
| T |
15770362 |
gatacaaaaagttttctacttggtttgtttatttttgggaagaattttatgcagataaaaagattcttagataacaaacggatgggggaaatactctcat |
15770263 |
T |
|
| Q |
441 |
tttactatggaaagttttacaaaactgatggatattgtagatggtcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttac |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||| | ||| ||||||| || |||||||||||| |
|
|
| T |
15770262 |
tttactatggaaagttttacaaaactgatggatatcgtagatggtcagagtgcaggaaaaaaaagggggggaaacgtatgataggacagaaactttttag |
15770163 |
T |
|
| Q |
541 |
tggaccaagacaagatgaattattatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgt |
628 |
Q |
| |
|
|||||| || ||| ||||| | || |||||||||||| ||||||||||||||||||| |||||| || ||| |||||||||||||||| |
|
|
| T |
15770162 |
tggaccgaggcaacatgaacttttgtctcgcttgattactcatgtatctgaagaatcgcaagatactctgtcacaggtattcaactgt |
15770075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 126 - 318
Target Start/End: Complemental strand, 15770655 - 15770463
Alignment:
| Q |
126 |
agaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtcctcgaataggtccggaataccaggcggaaattccttccgtgat |
225 |
Q |
| |
|
||||| || |||||| ||||||||| || || ||| ||||| ||||| | ||||||| ||||||||| | |||||||| ||||||||||||||| | |
|
|
| T |
15770655 |
agaatgatgatgataatttcatggagcacgtttctcacgaaggtcttgatttgagtcctagaataggtcatgcgtaccaggcagaaattccttccgtgct |
15770556 |
T |
|
| Q |
226 |
taagaaatcagagaagctcccacttcaaatgaatcctgctgattcaaaagattttcatgataaatcacgctcctatgcaatttgtttacccat |
318 |
Q |
| |
|
||||||||| ||| |||| | ||| |||||||||| |||||||| || | | ||||||||||||| |||| ||||||| |||| ||||| |
|
|
| T |
15770555 |
taagaaatcggagcagctttcgcttagaatgaatcctactgattcagaatctgtgcatgataaatcactttcctttgcaattggtttgcccat |
15770463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Complemental strand, 18376257 - 18376224
Alignment:
| Q |
564 |
tatctcgcttgattcctcatgtatctgaagaatc |
597 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
18376257 |
tatctcgcttgattcctcatgtatccgaagaatc |
18376224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University