View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_50 (Length: 364)
Name: NF17152_low_50
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 30600760 - 30601102
Alignment:
| Q |
1 |
taagtttgtaaaaatttatgcaattaaactgaattgaacaataaatttgagcgtaaaaaacatatttaaagttataagttataaattttaactacaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30600760 |
taagtttgtaaaaatttatgcaattaaaatgaattgaacaataaatttaaacgtaaaaaacatatttaaagttataagttataaattttgactacaaatt |
30600859 |
T |
|
| Q |
101 |
ttatcaattcgaataaaaatcaatttaaataagaacattnnnnnnnntattaatcacttgtataccttcataatcaatttaaacttcattcaaaagtgaa |
200 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30600860 |
ttatcaattctaaaaaaagtcaatttaaataagaacattaaacaa--tattaatcacttgtataccttcataatcaatttaaacttcattcaaaagtgaa |
30600957 |
T |
|
| Q |
201 |
accaaatataggctacatcaacttctccctctatctatgcccatcatctaattctaagttatgactatctcacttattgttttttcttagtttctttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30600958 |
accaaatataggctacatcaacttctccttctatctctgcccatcatctaattctaagttatgactatctcacttattgttttttcttagtttctttttc |
30601057 |
T |
|
| Q |
301 |
ggtctctcatcccaacctgattttcttgctattggaggtgcatga |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30601058 |
tgtctctcatcccaacctgattttcttgctattggaggtgcatga |
30601102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University