View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_51 (Length: 362)
Name: NF17152_low_51
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 1422860 - 1423190
Alignment:
| Q |
22 |
cttgatttttcaacagcatcatagatctattcatacataaaatataaaaactgcattccctataattgctagatcataaaaactatatttctattattga |
121 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1422860 |
cttgattattcaaaagcatcatagatctattgatacataaaatataaaaactgcattccctataattgttagatcataaaaactatatttctattattga |
1422959 |
T |
|
| Q |
122 |
tagattagatcataacaaactttgttatcattattgattac--tgtctttctctaaacataacaaataattattagaaaaaacacaattatcgaacgttt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1422960 |
tagactagatcataacaaactttgttatcattattgattacattgtctttctctaaacataacaaataattattagaaaaaaaacaatcatcgaacgttt |
1423059 |
T |
|
| Q |
220 |
taatcatttcacacttcatcgttattttannnnnnnggttacaatggaaggtacaatttgaaatcatttgatctaaattgctgtttatgaatttgaattc |
319 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1423060 |
taatcatttcatacttcatcgttattttatttttttggttacaatggaaggtacaatttgaaatcatttgatctaaattgctgtttttgaatttgaattc |
1423159 |
T |
|
| Q |
320 |
ttttccttccgaggcttcgaccattcttctc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1423160 |
ttttccttccgaggcttcgaccattcttctc |
1423190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University