View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_53 (Length: 353)
Name: NF17152_low_53
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 21684006 - 21683678
Alignment:
| Q |
10 |
tcacagaaacagctatcacacatgacatgatgatgaaagtctgaaaatttaaaagtgacaatgtgagccatacagtcatattctgtcaaatgtcatcggt |
109 |
Q |
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| T |
21684006 |
tcacagaaacagctatcacacatgacatgatgatgaaagtctgaaaatttaaaagtgacaatgtgagtcatacagtcatattctgtcaaatgtcaccggt |
21683907 |
T |
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| Q |
110 |
gaattgcacgggtttataactagtataagacgtcgtgaggattgatgatttgaaatttgacattacttaccaagactagaggagaatatttgtatgcaaa |
209 |
Q |
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| T |
21683906 |
gaattgcacgggtttataactagtataagacgtcgtgaggattgatgatttgaaatttgacattacttaccaagactagaggagaatatttgtatgcaaa |
21683807 |
T |
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| Q |
210 |
gacattttgcttggctagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaatggagcagactggtagagaagttgtgtggaagtg |
309 |
Q |
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| T |
21683806 |
gacattttgcttggttagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaatggagcagactggtagagaagttgtgtggaagtg |
21683707 |
T |
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| Q |
310 |
acattaagcttcttctgtattgtgttggt |
338 |
Q |
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| T |
21683706 |
acattaagcttcttctgtattgtgttggt |
21683678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 338
Target Start/End: Original strand, 40411738 - 40411900
Alignment:
| Q |
176 |
ttaccaagactagaggagaatatttgtatgcaaagacattttgcttggctagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaa |
275 |
Q |
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||||||||||| || |||||||||||| ||||| ||| |||| |||| |||| |||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
40411738 |
ttaccaagactgtagaagaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaa |
40411837 |
T |
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| Q |
276 |
tggagcagactggtagagaagttgtgtggaagtgacattaagcttcttctgtattgtgttggt |
338 |
Q |
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| T |
40411838 |
tggagcagaatggtagagcaactgtgtggaagaaacattaagcttcttttgtattgtgttggt |
40411900 |
T |
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