View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_56 (Length: 340)
Name: NF17152_low_56
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 1420604 - 1420933
Alignment:
| Q |
16 |
aataaatatatatcatctcaactactcaaaacttatgaatatttccttacnnnnnnnnn-gctgttgaaaaggaatatgtccattctattgtaaatatca |
114 |
Q |
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| T |
1420604 |
aatatatatatatcatctcaactactcaaa-cttatgaatatttccttacttttttttttgttgttgaaaaggaatatgtccattctattgtaaatatca |
1420702 |
T |
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| Q |
115 |
aaataaaaaagtatatgagatttaatctttgaataacgaaataaattgcgattatttctgaagttacatgaggaaattgaagaatggagatgaaaaattg |
214 |
Q |
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| T |
1420703 |
aaataaaaaagtatatgagatttaatctttgaataacgaaataaattgcgattatttctgaagttacatgaggaaattgaagaatggagatgaaaaattg |
1420802 |
T |
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| Q |
215 |
gatcttgatgtcttttcacaccttatactagttca-----nnnnnnnnngtgatgtttaaggtgtcaaagttcaagtagagaatgaacttgaaaaatgta |
309 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1420803 |
gatcttgatgtcttttcacaccttatactacttcattttttatttttttgtgatgtttaaggtgtcaaagttcaagtagagaatgaacttgaaaaatgta |
1420902 |
T |
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| Q |
310 |
ccttgttgtagaggctgaacgattcatctca |
340 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
1420903 |
ccttgttgtagaggctgaacgatttatctca |
1420933 |
T |
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