View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_59 (Length: 328)
Name: NF17152_low_59
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 21683958 - 21684241
Alignment:
| Q |
1 |
aattttcagactttcatcatcatgacatgtgtgatagctgtttctgtgaactttagcacttttctagtaataggaaaaacatctccagtaacatatcaag |
100 |
Q |
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| T |
21683958 |
aattttcagactttcatcatcatgtcatgtgtgatagctgtttctgtgaactttagcacttttctagtaataggaaaaacatctccagtaacgtatcaag |
21684057 |
T |
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| Q |
101 |
tgttgggccacctcaagacttgtcttgttctaggatttggctacacattgctccatgatcctttcacagaaaggaacattattggaatactagtagcagt |
200 |
Q |
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| T |
21684058 |
tgttgggccacctcaagacttgtcttgttctaggatttggctacacattgctccatgatcctttcactgaaaggaacattattggaatactagtagcagt |
21684157 |
T |
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| Q |
201 |
ttttggaatgggtttgtattcctatttctgcactcaggaaaacaaaaagaaactcgtagtcgatcctcctttgtcgtctcaggt |
284 |
Q |
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| T |
21684158 |
gtttggaatgggtttgtattcctatttctgcactcaggaaaacaaaaagaaactcgtagtcgatcctcctttgtcgtctcaggt |
21684241 |
T |
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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 40411588 - 40411389
Alignment:
| Q |
32 |
tgatagctgtttctgtgaactttagcacttttctagtaataggaaaaacatctccagtaacatatcaagtgttgggccacctcaagacttgtcttgttct |
131 |
Q |
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|||| ||||||||||||||||| ||||| |||||||| || || |||||||| || ||||| |||||||| | ||||||||||| || || |||||| | |
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| T |
40411588 |
tgattgctgtttctgtgaacttcagcacgtttctagttattggcaaaacatcacctgtaacttatcaagtactaggccacctcaaaacatgccttgttat |
40411489 |
T |
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| Q |
132 |
aggatttggctacacattgctccatgatcctttcacagaaaggaacattattggaatactagtagcagtttttggaatgggtttgtattcctatttctgc |
231 |
Q |
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| T |
40411488 |
aggctttggctacacattgctccatgaccccttcaatggaaggaacattattggaatattgattgctatttttggaatggttttgtactcttatttctgc |
40411389 |
T |
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