View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_60 (Length: 324)
Name: NF17152_low_60
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 38768433 - 38768137
Alignment:
| Q |
12 |
agtagcaaaggagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacatgctaatatttgtcattnnnnnnnnnnn-tcacattagaac |
110 |
Q |
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| T |
38768433 |
agtagcaaaagagttaaaggtcaagggtttgaatcctcgtacgggagaaaatactaacatgctaatatttgtcattaaaaaaaataaatcacattagaac |
38768334 |
T |
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| Q |
111 |
gtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactc |
210 |
Q |
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| T |
38768333 |
gtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactc |
38768234 |
T |
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| Q |
211 |
aggatttttatggtaaccagtgaaaacacttttgcctctgacacatatctccccacatggaggagttccaagaggattgtaacccatgtctggaact |
307 |
Q |
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| T |
38768233 |
aggattcttatggtaaccagtgaaaacacttttgcctctgacacatatctctccacatggcggagttccaagaggattgtaacccatgtctggaact |
38768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 307
Target Start/End: Original strand, 44995964 - 44996111
Alignment:
| Q |
160 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggatttttatggtaaccagtgaaaacacttttgcctctgacacatatc |
259 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||| ||||| |||| |||||| ||| ||||| | ||||||| |
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| T |
44995964 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
44996063 |
T |
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| Q |
260 |
tccccacatggaggagttccaagaggattgtaacccatgtctggaact |
307 |
Q |
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| T |
44996064 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaact |
44996111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 47774140 - 47774091
Alignment:
| Q |
22 |
gagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacat |
71 |
Q |
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| T |
47774140 |
gagttaaaggtccagggtttgaatcctggcaagggagaaaatactaacat |
47774091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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