View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_61 (Length: 319)
Name: NF17152_low_61
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 95 - 305
Target Start/End: Complemental strand, 32702258 - 32702048
Alignment:
| Q |
95 |
ctaattataaaaatggaatgtgagtatataagggggtactcatgccattgcaaaatattgaaagatactgggcagacaagattgttactcaatattgccc |
194 |
Q |
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| T |
32702258 |
ctaattataaaaatggaatgtgagtatataagggggtactcatgcctttgcaaaatattgaaagatactgggcagacaagattgttactcaatatggccc |
32702159 |
T |
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| Q |
195 |
ttagtatatagaaggaaggttgaatagacacacaagagtttttggaatggaaatgcattttctaagattcttttcaagttaattccttattgaacttaat |
294 |
Q |
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| T |
32702158 |
ttagtatatagaaggaaggttgaatagacacacaagagtttgtggaatggaaatgcattttctaagattcttttcaagttaattccttattgaacttaat |
32702059 |
T |
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| Q |
295 |
gtaggaaaaaa |
305 |
Q |
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||||||||||| |
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| T |
32702058 |
gtaggaaaaaa |
32702048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32702341 - 32702306
Alignment:
| Q |
1 |
aaacaactagctaatttgcgagatattttaaatcaa |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32702341 |
aaacaactagctaatttgcgagatattttaaatcaa |
32702306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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