View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_62 (Length: 309)

Name: NF17152_low_62
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_62
NF17152_low_62
[»] chr1 (3 HSPs)
chr1 (217-300)||(45604888-45604971)
chr1 (58-174)||(45605014-45605122)
chr1 (9-55)||(45605146-45605192)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 45604971 - 45604888
Alignment:
Q  217 catatttatttttctttgtttatcgaaccaacacctattgcgtcatagtcttaaacacaaggacaagaagaattgtaaacttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45604971 catatttatttttctttgtttatcgaaccaacacctattgcgtcatagtctcaaacacaaggacaagaagaattgtaaacttct 45604888  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 45605122 - 45605014
Alignment:
Q  58 ttaaaattatctaagagtctaatgatcgacggtgttttttaaaagtagaaattcatatcgttcctcgtctttactattaagacgataagacgaggacatg 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||        |||||||||||    
T  45605122 ttaaaattatctaagagtctaatgatcgacggtgttttttagaagtagaaattcacatcgttccttgtctttactattaag--------acgaggacatg 45605031  T
Q  158 atcgacgtcggtttgac 174  Q
    |||||||||||||||||    
T  45605030 atcgacgtcggtttgac 45605014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 45605192 - 45605146
Alignment:
Q  9 gagatgaaataaacctatgtggtgagattggggtggaccatttgata 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45605192 gagatgaaataaacctatgtggtgagattggggtggaccatttgata 45605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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