View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_64 (Length: 303)

Name: NF17152_low_64
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_64
NF17152_low_64
[»] chr2 (12 HSPs)
chr2 (1-303)||(2349933-2350235)
chr2 (39-301)||(2329671-2329933)
chr2 (161-303)||(2326078-2326220)
chr2 (196-301)||(2302558-2302663)
chr2 (170-301)||(2320233-2320364)
chr2 (170-300)||(2292913-2293043)
chr2 (170-301)||(2309244-2309375)
chr2 (37-100)||(2302411-2302474)
chr2 (36-123)||(2325965-2326052)
chr2 (50-116)||(2292805-2292871)
chr2 (53-129)||(2309139-2309215)
chr2 (50-130)||(2320125-2320205)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 2349933 - 2350235
Alignment:
Q  1 taaatctttatttcaaactctgtgttgcacaacacaaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2349933 taaatctttatttcaaactctgtgttgcacaacacaaaatttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 2350032  T
Q  101 agagccatcttctcctccctcaccaccaccaacaaaaccaccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||| ||||||||||||||||||||||    
T  2350033 agagccatcttctcctccctcaccaccaccaacaaaaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctcc 2350132  T
Q  201 gaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350133 gaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcat 2350232  T
Q  301 ctc 303  Q
    |||    
T  2350233 ctc 2350235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 39 - 301
Target Start/End: Original strand, 2329671 - 2329933
Alignment:
Q  39 acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac 138  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| |  |||||||||| |||||    
T  2329671 acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac 2329770  T
Q  139 caccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaacc 238  Q
    |||| |||||||       |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| |||     
T  2329771 caccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaact 2329870  T
Q  239 ctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatc 301  Q
    || ||  ||||| ||||||||||||||| ||| || ||| |||  ||||||||||||||||||    
T  2329871 cttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatc 2329933  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 2326078 - 2326220
Alignment:
Q  161 ccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtccta 260  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| |||||||||    
T  2326078 ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta 2326177  T
Q  261 tcatcactctcaaaatcagttaccgaccttccattttcatctc 303  Q
    |||||| ||| || ||| | | | |||||||||||| ||||||    
T  2326178 tcatcaatcttaatatcggctccagaccttccatttacatctc 2326220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 2302558 - 2302663
Alignment:
Q  196 gctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 295  Q
    |||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||| | ||| |||  ||||||||||||    
T  2302558 gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T
Q  296 ttcatc 301  Q
    ||||||    
T  2302658 ttcatc 2302663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 2320233 - 2320364
Alignment:
Q  170 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 269  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2320233 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2320332  T
Q  270 tcaaaatcagttaccgaccttccattttcatc 301  Q
    || | ||| |||  ||||||||||||||||||    
T  2320333 tccatatcggttctcgaccttccattttcatc 2320364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 2292913 - 2293043
Alignment:
Q  170 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 269  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2292913 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2293012  T
Q  270 tcaaaatcagttaccgaccttccattttcat 300  Q
    || | ||| |||  |||||||||||||||||    
T  2293013 tccatatcggttctcgaccttccattttcat 2293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 2309244 - 2309375
Alignment:
Q  170 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 269  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| |     
T  2309244 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattg 2309343  T
Q  270 tcaaaatcagttaccgaccttccattttcatc 301  Q
    || | ||| |||  | ||||||||||||||||    
T  2309344 tccatatcggttctcaaccttccattttcatc 2309375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 2302411 - 2302474
Alignment:
Q  37 aaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 100  Q
    ||||||||||  ||||||||||||||||||||  ||  || |||||||||||||||||||||||    
T  2302411 aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc 2302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 2325965 - 2326052
Alignment:
Q  36 aaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcac 123  Q
    ||||||||||||| ||||||||||||||||| |  ||  || |||| ||||||||||||||| ||| ||||||  |||||||| ||||    
T  2325965 aaaacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcac 2326052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
Q  50 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct 116  Q
    |||||| ||||||||||||  || ||| |||| |||||||||||||| |||||||||||| ||||||    
T  2292805 atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct 2292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
Q  53 gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac 129  Q
    |||||||||||||| |  || ||| ||||||||||||||||||| |||||||||||  |||||| | |||| |||||    
T  2309139 gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac 2309215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
Q  50 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc 130  Q
    ||||||||||||||||| |  || ||| | || |||||||||||||| |||||||||||| |||||| | |||| ||||||    
T  2320125 atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc 2320205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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