View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_68 (Length: 290)
Name: NF17152_low_68
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 25720753 - 25721018
Alignment:
| Q |
1 |
ttcattcaaaaaatatttaaccattttcttgcgttgtcattatagcctgttacattttggttttcaggaagccatagcaataggaagaacatttgcttct |
100 |
Q |
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| T |
25720753 |
ttcattcaaaaaatattttaccattttcgtgcgttgtcattatagcctgttacattttggttatcaggaagccatagcaataggaagaacatttgcttct |
25720852 |
T |
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| Q |
101 |
atgaaggactatcaactcgatggaaacaaagaaatggtggcattaggagctatgaatgttgttggttcgatgacttcctgctatgtagcaactggtaaga |
200 |
Q |
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| T |
25720853 |
atgaaggactatcaactcgatggaaacaaagaaatggtggcattaggagctatgaatgttgttggttcgatgacttcctgctatgtagcaactggtaaga |
25720952 |
T |
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| Q |
201 |
ttgagaaagtattaaaagcatatcagataatgcaacataaactttaacgggaccttaaaagatcaa |
266 |
Q |
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| T |
25720953 |
ttgagaaagtattaaaagcatatcagataatgcaacataaactttgacgggaccttaaaagatcaa |
25721018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 33299484 - 33299631
Alignment:
| Q |
53 |
cattttggttttcaggaagccatagcaataggaagaacatttgcttctatgaaggactatcaactcgatggaaacaaagaaatggtggcattaggagcta |
152 |
Q |
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| T |
33299484 |
cattttggtttt-aggaagccatagctattggaagaacatttgcatctatgaaggattatcagttagatggaaacagagaaatggtagcattaggaacaa |
33299582 |
T |
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| Q |
153 |
tgaatgttgttggttcgatgacttcctgctatgtagcaactggtaagat |
201 |
Q |
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| T |
33299583 |
tgaatgtcgttggttctatgacttcatgttatgtggcaactggtaagat |
33299631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 1494283 - 1494368
Alignment:
| Q |
83 |
ggaagaacatttgcttctatgaaggactatcaactcgatggaaacaaagaaatggtggcattaggagctatgaatgttgttggttc |
168 |
Q |
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||||||||||||||| ||||||| |||||| ||| ||||| |||| ||||||||||||| ||||| | ||||| ||||||||||| |
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| T |
1494283 |
ggaagaacatttgctgctatgaaagactattcactagatggtaacagagaaatggtggcactaggaacaatgaacgttgttggttc |
1494368 |
T |
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