View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_7 (Length: 617)
Name: NF17152_low_7
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 238 - 614
Target Start/End: Original strand, 44841915 - 44842291
Alignment:
| Q |
238 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcannnnnnnnnnnnnnnnnnnnnnnnatttattactttatcagccat |
337 |
Q |
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| T |
44841915 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcatttctttttctttttttagtttttatttattactttatcagccat |
44842014 |
T |
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| Q |
338 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaaactccttcggatttctaacct |
437 |
Q |
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| T |
44842015 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaaactccttcggatttctaacct |
44842114 |
T |
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| Q |
438 |
ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa |
537 |
Q |
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| T |
44842115 |
ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa |
44842214 |
T |
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| Q |
538 |
cgagtataactgttttttcctctcaaagccaatacttcatcccttgcaacttctgcgatgtcgccaccaacgataag |
614 |
Q |
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| T |
44842215 |
cgagtataactgttttttcctctcaaagccaatagttcatcccttgcaacttctgtgatgtcgccaccaacgataag |
44842291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 44841668 - 44841849
Alignment:
| Q |
15 |
cacagatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacatt--------------------- |
93 |
Q |
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| T |
44841668 |
cacagatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacattgacaggtacacacgcaggaaa |
44841767 |
T |
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| Q |
94 |
-catattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
174 |
Q |
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| T |
44841768 |
tcatattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
44841849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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