View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_71 (Length: 286)
Name: NF17152_low_71
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 32561895 - 32562162
Alignment:
| Q |
19 |
tccatgccagaaaataggagagactgtgcaggggcattcgctcgtgagtaatttagcattgccaatttcttctgaatcgcttccatttgcattgttgcca |
118 |
Q |
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| T |
32561895 |
tccatgctagaaaataggagagactgtgcaggggcattcgctcgtgagtaatttagcattgccaatttcttctgaatcgcttccatttgccttgttacca |
32561994 |
T |
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| Q |
119 |
tcttctgtgtgaacttatttagttttcttttttcacttcctctttagtgtttacagggttcgtgagattctatccaagaaagtttcaaaacaagcactta |
218 |
Q |
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| T |
32561995 |
tcttctgtgtgaacttatttagttttcttttttcacttcctctttagtgtttacagggttcgtgacattctatccaagaaagtttcaaaacaagcactta |
32562094 |
T |
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| Q |
219 |
aaatattagatgtattatataggtttctaatttgtacatgccttttctttaataatgttagtaatacc |
286 |
Q |
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| T |
32562095 |
aaatattagatgtattatataggtttctaatttgtacatgcattttctttaataatgttagtaatacc |
32562162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 20408164 - 20408107
Alignment:
| Q |
67 |
taatttagcattgccaatttcttctgaatcgcttccatttgcattgttgccatcttct |
124 |
Q |
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| T |
20408164 |
taatttagcattcctaatttcttctgaatcgcttccatttgctttgatgccatcttct |
20408107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 20366223 - 20366169
Alignment:
| Q |
70 |
tttagcattgccaatttcttctgaatcgcttccatttgcattgttgccatcttct |
124 |
Q |
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| T |
20366223 |
tttagcattcctaatttcttctgaatagcttccatttgctttgatgccatcttct |
20366169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 17841335 - 17841278
Alignment:
| Q |
67 |
taatttagcattgccaatttcttctgaatcgcttccatttgcattgttgccatcttct |
124 |
Q |
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| T |
17841335 |
taatttagaattcctaatttcttctgaatcgcttccatttgctttgatgccatcttct |
17841278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 5305629 - 5305572
Alignment:
| Q |
67 |
taatttagcattgccaatttcttctgaatcgcttccatttgcattgttgccatcttct |
124 |
Q |
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| T |
5305629 |
taatttagcattcctaatttcttctgaatcacttccatttgctttgatgccatcttct |
5305572 |
T |
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