View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_74 (Length: 282)
Name: NF17152_low_74
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 15329183 - 15329448
Alignment:
| Q |
1 |
attagaagagatatgagatcgaggaccgaatgaaacagaattcaggtatttcaaaccatccaaagctactaatgcatatctagattctagaatacaatgt |
100 |
Q |
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|||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
15329183 |
attagaagagatatgacatcgaggaccaaataaaacagaattcaggtatttcaaactatccaaagttactgaggcatatctagattctagaatacaatgt |
15329282 |
T |
|
| Q |
101 |
aattaaagaagacatgccctaaccttggtcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtactt |
200 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15329283 |
aactaaagaagacatgccctaaccttgctcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtactt |
15329382 |
T |
|
| Q |
201 |
catatttatatccacgagagaggcattaattttcatggtgtgcaatacttttgtgttcttcaatat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15329383 |
catatttatatccacgagagaggcattaattttcatggtgtgcaatacttttgcgttcttcaatat |
15329448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 11378624 - 11378473
Alignment:
| Q |
112 |
acatgccctaaccttggtcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtacttcatatttatat |
211 |
Q |
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||||||||||||||| | |||||||||||| | ||||||||| |||||||||||||||| || ||| || ||||| ||||||| ||| || ||||||| |
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| T |
11378624 |
acatgccctaaccttacttaatcaaatgaaattttacatgtagttgagccccttggacacaaagttaacttgattagaatttggtgctttatgtttatat |
11378525 |
T |
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| Q |
212 |
ccacgagagaggcattaattttcatggtgtgcaatacttttgtgttcttcaa |
263 |
Q |
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| T |
11378524 |
ccacaggagaggcattgattgtcattgtctgcaatacttttgcattcttcaa |
11378473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 11375448 - 11375297
Alignment:
| Q |
112 |
acatgccctaaccttggtcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtacttcatatttatat |
211 |
Q |
| |
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||||||| ||||||| |||||| ||||||| | ||||||||| || |||||| |||||| |||||| || ||||| ||||||| ||| |||||||||| |
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| T |
11375448 |
acatgccataaccttactcaatcgaatgaaattttacatgtagttgatcccctttgacacaaagataacttgattagaatttggtgctttatatttatat |
11375349 |
T |
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| Q |
212 |
ccacgagagaggcattaattttcatggtgtgcaatacttttgtgttcttcaa |
263 |
Q |
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||| ||||||||| ||| ||||| | ||||||||||||| |||||||| |
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| T |
11375348 |
ccatagaagaggcattgattgtcatgatctgcaatacttttgcattcttcaa |
11375297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 12647491 - 12647348
Alignment:
| Q |
110 |
agacatgccctaaccttggtcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtacttcatatttat |
209 |
Q |
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||||||| ||||||||| ||||| |||||||| | || |||| ||||||| ||||||| |||||||||||||| |||||||| ||| ||||| || |
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| T |
12647491 |
agacatgacctaacctttatcaataaaatgaaaatttgcacgtagcagagccctttggacatgaagataatttcattatcatttggtgctttatattcat |
12647392 |
T |
|
| Q |
210 |
atccacgagagaggcattaattttcatggtgtgcaatacttttg |
253 |
Q |
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|||||| | |||||| | ||| |||||||| ||| |||||||| |
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| T |
12647391 |
atccaccggcgaggcaattattgtcatggtgcgcattacttttg |
12647348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 12487002 - 12486903
Alignment:
| Q |
101 |
aattaaagaagacatgccctaaccttggtcaatcaaatgaa----agtacacatgtagtagagccccttggacacagagataatttcattagcatttggt |
196 |
Q |
| |
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|||||||| |||| || ||||||||| ||||||||||||| ||| ||||| | |||||||||||||||||| |||||| | |||||||||||||| |
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| T |
12487002 |
aattaaagtagacgtgtcctaaccttcttcaatcaaatgaatgaaagtttacatgcaatagagccccttggacacaaagataaatccattagcatttggt |
12486903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 12508395 - 12508335
Alignment:
| Q |
136 |
aatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggt |
196 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
12508395 |
aatgaaagtttacatccagtagagccccttggacacaaagataaatccattagcatttggt |
12508335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 12541123 - 12541063
Alignment:
| Q |
136 |
aatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggt |
196 |
Q |
| |
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||||||||| ||||| | |||||||||||||||||| |||||| | |||||||||||||| |
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| T |
12541123 |
aatgaaagtttacatgcaatagagccccttggacacaaagataaatccattagcatttggt |
12541063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 12659270 - 12659207
Alignment:
| Q |
133 |
tcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggt |
196 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
12659270 |
tcaaatgagagtttacatgtagcagagccccttggacatgaagataatttcaatagcatttggt |
12659207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 35398527 - 35398382
Alignment:
| Q |
113 |
catgccctaaccttggtcaatcaaatgaaagtacacatgtagtagagccccttggacacag-----agataatttcattagcatttggtacttcatattt |
207 |
Q |
| |
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|||||||||||||| ||||| |||||||| | ||||||||| || ||||||||||||| |||||| || |||||||||||| ||| |||||| |
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| T |
35398527 |
catgccctaaccttaatcaatgaaatgaaattttacatgtagttgatccccttggacacaacacaaagataacttgattagcatttggagctttatattt |
35398428 |
T |
|
| Q |
208 |
atatccacgagagaggcattaattttcatggtgtgcaatacttttg |
253 |
Q |
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|||||||| |||||||||| ||| ||||||| |||||| |||||| |
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| T |
35398427 |
atatccacaggagaggcattgattgtcatggtctgcaattcttttg |
35398382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 14987355 - 14987408
Alignment:
| Q |
147 |
acatgtagtagagccccttggacacagagataatttcattagcatttggtactt |
200 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||| | |||||||||||||||||| |
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|
| T |
14987355 |
acatataggagagccccttggacacaaagataaatccattagcatttggtactt |
14987408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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