View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_75 (Length: 277)
Name: NF17152_low_75
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 55669032 - 55668773
Alignment:
| Q |
1 |
tcactattagtagcatgtcgctaagctaaattgagaaaggaaaaaaggcatcaagctaaattgaatctgtcattaattttatcttgattttctagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55669032 |
tcactattagtagcatgtcgctaagctaaattgagaaaggaaaaaaggcatcaagctaaattgaatctgtcattaattttatcttgattttctagaagaa |
55668933 |
T |
|
| Q |
101 |
ccaaagttttgggacatgaataaaaatttagaaacaccaaagattaggaatagatcagggagaacctctttggtgtgttaatataatttctttggctttt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55668932 |
ccaaagttttgggacatgaataaaaatttaaaaacaccaaagattaggaatagatcagggagtacctctttggtgtgttaatataatttctttggctttt |
55668833 |
T |
|
| Q |
201 |
tcaa-aaaataatcagtttgaaatcaactattatttgaacatcataacactgacactata |
259 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55668832 |
tcaaaaaaataatcagtttgaaatcaactattatttgaacatcataacactgacactata |
55668773 |
T |
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