View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_78 (Length: 274)
Name: NF17152_low_78
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 3080231 - 3080063
Alignment:
| Q |
86 |
cttcaaatattgatagtccttgtaaatggaatatatggtggtgtatgttgtagtgacacataccagcacttctccttgtgatgattatataatgtgcaaa |
185 |
Q |
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| T |
3080231 |
cttcaaatattgatagtccttgtaaatggaatatatggtg---tatgttgtagtgacacataccagcacttctccttgtgatgattatataatgtgcaaa |
3080135 |
T |
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| Q |
186 |
gctcaacaataccagccgctattactttcactaacatgaagattagtttatttttaccgtaaaactatggtg |
257 |
Q |
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| T |
3080134 |
gctcaacaataccagccgctattactttcactaacatgaagattagtttatttttaccgcaaaactatggtg |
3080063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 3089821 - 3089684
Alignment:
| Q |
86 |
cttcaaatattgatagtccttgtaaatggaatatat--ggtggtgtatgttgtagtgacacataccagcacttctccttgtgatgattatataatgtgca |
183 |
Q |
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| T |
3089821 |
cttcaaatat-gatagtccttgtaaatggaatatatatggtagagtatgttgtagtgacacataccaacccttctttttgtgatgattatataatgtgca |
3089723 |
T |
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| Q |
184 |
aagctcaacaataccagccgctattactttcactaacat |
222 |
Q |
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| T |
3089722 |
aagcctaacgataccagcggctataactttgactaacat |
3089684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3080311 - 3080256
Alignment:
| Q |
16 |
cttatgacttgtgaggaacaacaacaaggctgataaacttcaaatattgatcttgt |
71 |
Q |
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| T |
3080311 |
cttatgacttgtgaggaacaacaacaaggctgataaacttcaaatattaatcttgt |
3080256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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