View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_8 (Length: 587)

Name: NF17152_low_8
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_8
NF17152_low_8
[»] chr5 (7 HSPs)
chr5 (18-316)||(35025292-35025591)
chr5 (19-302)||(37851668-37851952)
chr5 (369-572)||(35025028-35025232)
chr5 (20-302)||(37838339-37838622)
chr5 (20-302)||(37832816-37833099)
chr5 (21-122)||(37844645-37844746)
chr5 (21-139)||(37846190-37846308)
[»] chr7 (5 HSPs)
chr7 (18-302)||(36867020-36867305)
chr7 (473-572)||(36867650-36867749)
chr7 (407-457)||(16666815-16666865)
chr7 (407-457)||(17641185-17641235)
chr7 (406-456)||(9209639-9209689)
[»] chr6 (2 HSPs)
chr6 (369-429)||(16001114-16001174)
chr6 (369-457)||(26853394-26853482)
[»] chr4 (1 HSPs)
chr4 (369-429)||(33580363-33580423)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 35025591 - 35025292
Alignment:
Q  18 acctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcata 117  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025591 acctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcata 35025492  T
Q  118 ggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgc 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025491 ggttattttcagaacaactagattcgctacgctggcaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgc 35025392  T
Q  218 accttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgtggatccttctcctgctgtcatagca 316  Q
    | |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35025391 atcttatcactcattagcttaaacaagttcttattataaaagccaataacatctttaatggtcggcctccttcgttgatccttctcctgctgtcatagca 35025292  T

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Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 37851952 - 37851668
Alignment:
Q  19 cctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcatag 118  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  37851952 cctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaagcatag 37851853  T
Q  119 gttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgca 218  Q
    ||||||||  |||||||||||||||||| ||  | || ||||| | || ||||||||||||||||||| ||||  | |||||||||||||| ||||||||    
T  37851852 gttatttttggaacaactagattcgctatgccaaaaacttttttatactgaatcttaccatttcccatcagttccactacaagtccatcaccatattgca 37851753  T
Q  219 ccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgtggatccttctc 302  Q
    ||| ||||  ||| | |||||||| ||||||||||| |||||| |||||| |||| ||||| | |||| ||||||||||||||||    
T  37851752 cctcatcatacctcatcttaaacaggttcttattataaaagcctataacaactttcatggttgtcctctttcgtggatccttctc 37851668  T

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Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 369 - 572
Target Start/End: Complemental strand, 35025232 - 35025028
Alignment:
Q  369 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgatttnnnnnnnnnnn 468  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  35025232 ccggtatgtcggagacatttgtatttgttatgctctcgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgatttcaaaaaaaaaa 35025133  T
Q  469 nnnntt-gccaactaatctaacctatagtgccgatatgtcagttttaggttcaaaaaatctctttctatacccatgcacacatcttcctccaagaatcac 567  Q
        || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35025132 aaaatttgccaactaatctaacctatagtgccgatacgtcagttttaggttcaaaaaatctctttctatacccatgcacgcatcttcctccaagaatcac 35025033  T
Q  568 ctttg 572  Q
    |||||    
T  35025032 ctttg 35025028  T

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Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 37838622 - 37838339
Alignment:
Q  20 ctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcatagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||    
T  37838622 ctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaagatcaaaattggccaagcatagg 37838523  T
Q  120 ttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgcac 219  Q
    |||||||  ||| ||||||||||  |||||  ||||  |||| || | | |  |||||||||||||| |||||||||  ||||||   || |||||| ||    
T  37838522 ttatttttggaagaactagattcaatacgccaacaaccttttgagccagcaatttaccatttcccatcagtttaattgaaagtcctataccatattgaac 37838423  T
Q  220 cttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgtggatccttctc 302  Q
     | ||||| |||||||||||||| ||  ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  37838422 ttcatcacaccttagcttaaacaggtagttattataaaagtcaataacatctttcatggtcggcctccttcgtggatccttctc 37838339  T

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Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 37833099 - 37832816
Alignment:
Q  20 ctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcatagg 119  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||  | |||||||||| |    
T  37833099 ctatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccattgatagagggaatgaaggtcaaatgacgccaagcataag 37833000  T
Q  120 ttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgcac 219  Q
    |||||||  ||| || ||||   ||||| ||||| ||||||  ||||  ||||||||| |||||||| |||||||||  ||||||||| | |||||| ||    
T  37832999 ttatttttggaagaattagagcagctaccctgaccaattttacagactcaatcttaccgtttcccatcagtttaattgtaagtccatcgccatattgaac 37832900  T
Q  220 cttatcactccttagcttaaacaagttcttatt-ataaagccaataacatctttaatggtcggcctccttcgtggatccttctc 302  Q
    || ||||| ||| |||||||||||||| ||||| | ||| | ||||||| |||| |||||||||||   |||||||||||||||    
T  37832899 ctcatcacacctcagcttaaacaagttgttattaaaaaaacgaataacacctttcatggtcggcctatctcgtggatccttctc 37832816  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 37844746 - 37844645
Alignment:
Q  21 tatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcataggt 120  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||| || |||||||  |  |||||||||||| ||||||| ||||||| |||||||    
T  37844746 tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggt 37844647  T
Q  121 ta 122  Q
    ||    
T  37844646 ta 37844645  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 37846308 - 37846190
Alignment:
Q  21 tatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcataggt 120  Q
    |||||||||||||  |||| |||||||||||||||||| |||  |||||| |||| |||||||||||||||||| | ||||||| ||||   | ||||||    
T  37846308 tatattgaccccactgtgagaggaaaaaccaattgaaaagttgtgtaagtgttggcccagtgatagagggaaggtaaatcaaacaaggctgggaataggt 37846209  T
Q  121 tattttcagaacaactaga 139  Q
    ||||||  |||||| ||||    
T  37846208 tatttttggaacaattaga 37846190  T

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Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 36867305 - 36867020
Alignment:
Q  18 acctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccagtgatagagggaaggaagatcaaactaggccaagcata 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  || |||||||||||||||||||||||||||||||||| ||||    
T  36867305 acctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaagatcaaactaggccaaacata 36867206  T
Q  118 ggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatcacaatattgc 217  Q
    | |||||||  ||||| |||||||||||| |||| | ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36867205 gtttatttttggaacagctagattcgctatgctggcgaatttttcagacaaaatcttaccatttcccattagtttaattacaagtccatcacaatatttc 36867106  T
Q  218 accttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgtggatccttctc 302  Q
    |||||||||| ||| ||||||||||||||| |||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  36867105 accttatcacacctcagcttaaacaagttcgtattataaaaggcaataacatctttcatggttggcctccttcgtggatccttctc 36867020  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 572
Target Start/End: Original strand, 36867650 - 36867749
Alignment:
Q  473 ttgccaactaatctaacctatagtgccgatatgtcagttttaggttcaaaaaatctctttctatacccatgcacacatcttcctccaagaatcacctttg 572  Q
    |||||||||||| |||||||||| |  |||||||||||||||||||||||||||||| || | ||||||||||||| ||||||| ||||||| |||||||    
T  36867650 ttgccaactaatttaacctatagcgttgatatgtcagttttaggttcaaaaaatctcattatgtacccatgcacacctcttcctacaagaattacctttg 36867749  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 16666815 - 16666865
Alignment:
Q  407 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 457  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  16666815 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 16666865  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 17641185 - 17641235
Alignment:
Q  407 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 457  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  17641185 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 17641235  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 9209689 - 9209639
Alignment:
Q  406 gagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgatt 456  Q
    |||||||||||||  |||||||||||||||  | |||||||||||||||||    
T  9209689 gagtttgttgtgcatcttgtacactctcgacgtgaataaattttgctgatt 9209639  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 16001114 - 16001174
Alignment:
Q  369 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 429  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||||||    
T  16001114 ccggtatgtcgtagacgtttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 16001174  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 26853394 - 26853482
Alignment:
Q  369 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 457  Q
    ||||||||||||||||  |||||| ||||   |||| |||||||||||||| | |||||||||||||| |||||||| |||||||||||    
T  26853394 ccggtatgtcggagacaattgtatatgtttgcctctcgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt 26853482  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 33580423 - 33580363
Alignment:
Q  369 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 429  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||    
T  33580423 ccggtatgtcggagacgcttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 33580363  T

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