View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_80 (Length: 264)
Name: NF17152_low_80
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 40518563 - 40518313
Alignment:
| Q |
1 |
attatcataaaatatttcaaatttcacactaggannnnnnnnnacgagcaaacacactttgattttaaaatatatatcttatagtattcgtaatttaaat |
100 |
Q |
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| T |
40518563 |
attatcataaaatatttcaaatttcacgctaggatttttttt-acgagcaaacacactttgattttaaaatatat--cttatagtattcgtaatttaaat |
40518467 |
T |
|
| Q |
101 |
aagaaaactcaactctccctcctttctaaaactcaatccaaacgtatataggcttacaaagttaaaccaccgaggttgtaccttagttgtagaacttcct |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40518466 |
aagaaaactcaactctccctcctttccaaaactcaatccaaacatatataggcttacaaagttaaaccaccgaggttgtaccttagttgtagaacttcct |
40518367 |
T |
|
| Q |
201 |
tgcaaaatgtcaaaatttgatccaagatgaagttatacgtgtaagtaacctatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40518366 |
tgcaaaatgtcaaaatttgatccaagatgaagttatacgtgtaagtaacctatg |
40518313 |
T |
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