View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_83 (Length: 253)
Name: NF17152_low_83
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 45604483 - 45604708
Alignment:
| Q |
18 |
ctttgatgagtctctttggtgatgctcttataattgtgtggatcttgtgttgcaagtttttgaagagagggtgaagagttcattgtatctgagcttgagc |
117 |
Q |
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| T |
45604483 |
ctttgatgagtctctttggtgatgctcttataattatgtggatcttgtgttgcaagtttttgaagagagggtgaagagttcattgtatctgagcttgagc |
45604582 |
T |
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| Q |
118 |
tagcatattgaaattgtttgtgtgattccatttccatagctttggccactctctttttcaaatatgaatgccaatagttttttatctcattgtctgtcct |
217 |
Q |
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| T |
45604583 |
tagcatattgaaattgtttgtgtgattccatttccatagctttggccactctctttttcaaatatgaatgccaatagttttttatctcattgtctgtcct |
45604682 |
T |
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| Q |
218 |
tcctggcaaatgttgtgctatctgtg |
243 |
Q |
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| T |
45604683 |
tcctggcaaatgttgtgctatctgtg |
45604708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 20069999 - 20069851
Alignment:
| Q |
93 |
gagttcattgtatctgagcttgagctagcatattgaaattgtttgtgtgattccatttccatagctttggccactctctttttcaaatatgaatgccaat |
192 |
Q |
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| T |
20069999 |
gagttcattgtatctgagcttgaactagcatattgaatttgagtatgagattcaatatccttacttttgacttctttctttttcagatatgaatgccaat |
20069900 |
T |
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| Q |
193 |
agttttttatctcattgtctgtccttcctggcaaatgttgtgctatctg |
241 |
Q |
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| T |
20069899 |
aatttttaatctcgttgtcggtccttcccggcaattgttgtgcaatctg |
20069851 |
T |
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