View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_86 (Length: 243)

Name: NF17152_low_86
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_86
NF17152_low_86
[»] chr3 (6 HSPs)
chr3 (1-229)||(1090692-1090921)
chr3 (1-229)||(1076886-1077115)
chr3 (1-229)||(1299905-1300134)
chr3 (1-229)||(1049970-1050198)
chr3 (2-229)||(1107089-1107316)
chr3 (74-222)||(13854732-13854880)
[»] chr5 (3 HSPs)
chr5 (85-212)||(28419535-28419662)
chr5 (72-212)||(28432753-28432893)
chr5 (117-222)||(22689686-22689791)
[»] scaffold0090 (1 HSPs)
scaffold0090 (73-222)||(8616-8765)
[»] chr8 (3 HSPs)
chr8 (72-204)||(23555101-23555233)
chr8 (133-206)||(23285651-23285724)
chr8 (133-206)||(23392841-23392914)
[»] chr2 (2 HSPs)
chr2 (161-215)||(2662840-2662894)
chr2 (130-224)||(34328530-34328624)
[»] chr4 (5 HSPs)
chr4 (156-215)||(31740276-31740335)
chr4 (156-210)||(31732710-31732764)
chr4 (156-210)||(31745611-31745665)
chr4 (156-200)||(31696812-31696856)
chr4 (156-200)||(31707904-31707948)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1090692 - 1090921
Alignment:
Q  1 catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1090692 catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaagg 1090791  T
Q  100 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1090792 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 1090891  T
Q  200 gcattcaaggagaagagagaatgcttatct 229  Q
    ||||||||||||||||||||||||||||||    
T  1090892 gcattcaaggagaagagagaatgcttatct 1090921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1076886 - 1077115
Alignment:
Q  1 catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||    
T  1076886 catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaagg 1076985  T
Q  100 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1076986 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 1077085  T
Q  200 gcattcaaggagaagagagaatgcttatct 229  Q
    ||||||||||||||||||||||||||||||    
T  1077086 gcattcaaggagaagagagaatgcttatct 1077115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1300134 - 1299905
Alignment:
Q  1 catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||    
T  1300134 catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaagg 1300035  T
Q  100 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300034 ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt 1299935  T
Q  200 gcattcaaggagaagagagaatgcttatct 229  Q
    ||||||||||||||||||||||||||||||    
T  1299934 gcattcaaggagaagagagaatgcttatct 1299905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1049970 - 1050198
Alignment:
Q  1 catgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1049970 catgagaaatctcttgagtctcattttctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggc 1050069  T
Q  101 tttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg 200  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1050070 tttcaggaagttcgaaacaaggaacaagagaatttaaaaatgaagttatattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttg 1050169  T
Q  201 cattcaaggagaagagagaatgcttatct 229  Q
    |||||||||||||||||||||||||||||    
T  1050170 cattcaaggagaagagagaatgcttatct 1050198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 1107089 - 1107316
Alignment:
Q  2 atgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggct 101  Q
    |||||||| | |||||||||| ||| |||||||||||||| |||||||| ||||||||||||||   |  |||  | | |||||||||||||||||||||    
T  1107089 atgagaaaacccttgagtctctttttctaacaattttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggct 1107188  T
Q  102 ttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgc 201  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||||||||||||     
T  1107189 ttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgt 1107288  T
Q  202 attcaaggagaagagagaatgcttatct 229  Q
    |||||||||||||||| |||||||||||    
T  1107289 attcaaggagaagagaaaatgcttatct 1107316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 13854732 - 13854880
Alignment:
Q  74 atgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcg 173  Q
    |||||||||| ||||| ||||||||||||||| | |||||   ||||||| | ||||| ||| |||||||||||||||||||| | ||||||||||| ||    
T  13854732 atgggcaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgtactaaacttcaacaccg 13854831  T
Q  174 aaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatg 222  Q
    ||||||||| |||||| |||||||||| ||| |||||||||||| ||||    
T  13854832 aaatcttgtaaaggttgttggttgttgtattgaaggagaagagaaaatg 13854880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 28419535 - 28419662
Alignment:
Q  85 attgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgtta 184  Q
    ||||| |||||||| |||||||||| |||  | |||||||| |||||||||||||||||||| ||||| || |  ||| | |||||||||||||||||||    
T  28419535 attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatattgtgcgttaaattgcaacatcgaaatcttgtta 28419634  T
Q  185 aggttcttggttgttgcattcaaggaga 212  Q
    |||||||||||||||||||| |||||||    
T  28419635 aggttcttggttgttgcattgaaggaga 28419662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 28432753 - 28432893
Alignment:
Q  72 agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat 171  Q
    |||||| |||||  |||| |||||||| |||||||||| |||    |||||||  |||||||||||||||||||| ||||| ||||| ||| | ||||||    
T  28432753 agatggacaagaagttgcagtcaaaagactttcaggaaattcttgtcaaggattgaaagaatttaaaaatgaagtcatattgtgtgctaaattgcaacat 28432852  T
Q  172 cgaaatcttgttaaggttcttggttgttgcattcaaggaga 212  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  28432853 cgaaatcttgttaaggttattggttgttgcattgaaggaga 28432893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 22689791 - 22689686
Alignment:
Q  117 acaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagag 216  Q
    ||||||||||| |||||||||||||||||| ||||| || || ||| | |||||||||||||||||||||||| |||||||||||||| ||||||| |||    
T  22689791 acaaggatcaatagaatttaaaaatgaagtcatattgtgcgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggagacgag 22689692  T
Q  217 agaatg 222  Q
    | ||||    
T  22689691 aaaatg 22689686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 8765 - 8616
Alignment:
Q  73 gatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatc 172  Q
    ||||| ||||| ||||| ||||||||||||||| | |||||   |||||||   ||||| ||||| |||||||||||||||||| | ||||||||||| |    
T  8765 gatggacaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgtactaaacttcaacacc 8666  T
Q  173 gaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatg 222  Q
    ||||||||||||||||| |||||||||| ||| ||||||| |||| ||||    
T  8665 gaaatcttgttaaggttgttggttgttgtattgaaggagatgagaaaatg 8616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 23555101 - 23555233
Alignment:
Q  72 agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat 171  Q
    |||||| ||||| || || |||||||| ||||| || | ||| | ||||||||   |||||||||| | |||||| ||||||||||| |||||||||||     
T  23555101 agatggtcaagaaatagcagtcaaaagactttctgggaattctatacaaggattggaagaatttaagagtgaagtaatattatgtgctaaacttcaacac 23555200  T
Q  172 cgaaatcttgttaaggttcttggttgttgcatt 204  Q
    |||||||||||||||||  ||||||||||||||    
T  23555201 cgaaatcttgttaaggtgattggttgttgcatt 23555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 23285724 - 23285651
Alignment:
Q  133 tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca 206  Q
    ||||||||||||||| | ||   ||||||||||||||| || |||||||| ||| |||||||||| ||||||||    
T  23285724 tttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 23285651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 23392841 - 23392914
Alignment:
Q  133 tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca 206  Q
    ||||||||||||||| | ||   ||| ||||||||||| || |||||||| ||| |||||||||| ||||||||    
T  23392841 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 23392914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 2662894 - 2662840
Alignment:
Q  161 aacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga 215  Q
    ||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  2662894 aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaaga 2662840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 34328530 - 34328624
Alignment:
Q  130 gaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgct 224  Q
    ||||||||||| ||||| | |||   ||| ||||||||||| ||||||||||| ||| |||||||||||||| || ||||||| |||| ||||||    
T  34328530 gaatttaaaaacgaagtaaaattgattgcgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgct 34328624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 31740276 - 31740335
Alignment:
Q  156 tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga 215  Q
    ||||||||||||||| ||||||||  | ||| | || |||||||||||||||||||||||    
T  31740276 tgcaaaacttcaacaccgaaatctactaaagctgctaggttgttgcattcaaggagaaga 31740335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 31732710 - 31732764
Alignment:
Q  156 tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga 210  Q
    ||||||||||||||| |||||||| || ||| | || ||||||||||||||||||    
T  31732710 tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga 31732764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 31745611 - 31745665
Alignment:
Q  156 tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga 210  Q
    ||||||||||||||| |||||||| || ||| | || ||||||||||||||||||    
T  31745611 tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga 31745665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31696812 - 31696856
Alignment:
Q  156 tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg 200  Q
    ||||||||||||||| |||||||| |||||| ||||||| |||||    
T  31696812 tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg 31696856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31707904 - 31707948
Alignment:
Q  156 tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg 200  Q
    ||||||||||||||| |||||||| |||||| ||||||| |||||    
T  31707904 tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg 31707948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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