View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_87 (Length: 243)
Name: NF17152_low_87
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40518176 - 40517944
Alignment:
| Q |
1 |
atttctcagacatgtcgctttgatgcattcaatgtatgccacagtgaacgcaggccaataatatagggattccaatgatatattatatggtataccaatt |
100 |
Q |
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| T |
40518176 |
atttctcagacatgtcgctttgatgcattcaatgtatgccacagtgaacgcaggccaataatatagggattccaatgatatattatatggtataccaatt |
40518077 |
T |
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| Q |
101 |
taatgataatttagtgaaaagtagagaacagaaaaaactttactactctttttggtgaatttccttccagcagagctagcttggttaaacacgagatttg |
200 |
Q |
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| T |
40518076 |
taatgataatttagtgaaaagtagagaacaaaaaaaactttactactctttttggtgaatttccttccagcagagctagcttggttaaacacgagatttg |
40517977 |
T |
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| Q |
201 |
atcagacgttagtaaatgtgatatttagtatta |
233 |
Q |
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| T |
40517976 |
atcagacgttagtaaatgtgatatttagtatta |
40517944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34464707 - 34464625
Alignment:
| Q |
1 |
atttctcagacatgtcgctttgatgcattcaatgtatgccacagtgaacgcaggccaataatatagggattccaatgatatat |
83 |
Q |
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||||| |||||| ||||||||||||| ||||||| || ||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
34464707 |
atttcgcagacaagtcgctttgatgctttcaatgcatcccacagtgaacacatgccaataatatagggattccaatgatatat |
34464625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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