View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_9 (Length: 580)
Name: NF17152_low_9
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 2349956 - 2349483
Alignment:
| Q |
11 |
cacagagtttgaaataaagatttatttattgtgaatggttatcttgctggtcaagaataataatattacacattcattcccatgcataagggattttcct |
110 |
Q |
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| T |
2349956 |
cacagagtttgaaataaagatttatttattgtgaatggttatcttgctggccaagaataataatattacacattcattcccatgcataagggattttcct |
2349857 |
T |
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| Q |
111 |
ttattctagctatcaccaccagctcatgagttttagatagaattgtgaatcctcttattgttctcatttttggggtcacatgctcgactactttcattca |
210 |
Q |
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| T |
2349856 |
ttattctagctatcaccaccagctcatgagttttagatagaattgtgaatcctcttattgttctcatttttggggtcacatgctcgactactttcattca |
2349757 |
T |
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| Q |
211 |
tttcagcagttggtgctgtgctgctagtttggcatgttcaggattgagataaataacacacgtttctccttctcatacaaacaaacaaattaattaatta |
310 |
Q |
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| T |
2349756 |
tttcagcagttggtgctgtgctgctagtttggcatgttcaggattgagataaataacacacgtttctccttctcatacaaacaaacaaattaattaatta |
2349657 |
T |
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| Q |
311 |
aggtgtatatttaattgaacttaccacacataatgattatgtttaaaactatttcgaaatttttagagctaccacttgtggacgtaattaaacataactt |
410 |
Q |
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| T |
2349656 |
aggtgtatatttaattgaacttaccacacataatgattatgttaaaaactatttcgaaatttttagagctaccacttgtggacg----taaacataactt |
2349561 |
T |
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| Q |
411 |
atttaattcacccggtgaataaatac-aattcaaacttcaatccttgcatattgcagtgtcgtccgtatacgggattg |
487 |
Q |
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| T |
2349560 |
atttaattcacccggtgaataaatacaaattcaaacttcaatccttgcatattgcagtgtcgtccgtatacgggattg |
2349483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 2349447 - 2349406
Alignment:
| Q |
523 |
gtgagtactaaattgattaaatttatgatttatagaagaggg |
564 |
Q |
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| T |
2349447 |
gtgagtactaaattgattaaatttataatttatagaagaggg |
2349406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 2292654 - 2292621
Alignment:
| Q |
268 |
acacgtttctccttctcatacaaacaaacaaatt |
301 |
Q |
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| T |
2292654 |
acacgtctctccttctcatacaaacaaacaaatt |
2292621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 2319974 - 2319941
Alignment:
| Q |
268 |
acacgtttctccttctcatacaaacaaacaaatt |
301 |
Q |
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| T |
2319974 |
acacgtctctccttctcatacaaacaaacaaatt |
2319941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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