View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_96 (Length: 233)
Name: NF17152_low_96
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 54045423 - 54045339
Alignment:
| Q |
3 |
ctcattgttattaataaaaaa-tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactca |
86 |
Q |
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| T |
54045423 |
ctcattgttattaataaaaaaatgccacacaaaggtggtatgggagtggtattgccacctagggtggtcagcgtataagcactca |
54045339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2922118 - 2922066
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
69 |
Q |
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| T |
2922118 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt |
2922066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2923316 - 2923368
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
69 |
Q |
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| T |
2923316 |
ataaaaaatgccacacaagggtggcatgggagtggta-tgccacctagagtggt |
2923368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 25331844 - 25331914
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat |
87 |
Q |
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| T |
25331844 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat |
25331914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 25323725 - 25323674
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtgg |
68 |
Q |
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| T |
25323725 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtgg |
25323674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7739262 - 7739201
Alignment:
| Q |
24 |
tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc |
85 |
Q |
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| T |
7739262 |
tgccacacaagggtggtatatgggtggtattgccacctatggtggttagtgtataaggactc |
7739201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 36200871 - 36200932
Alignment:
| Q |
24 |
tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc |
85 |
Q |
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| T |
36200871 |
tgccacacaagggtggtatatgggtgggattgccacctatggtggttagtgtataaggactc |
36200932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 34345315 - 34345263
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
69 |
Q |
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| T |
34345315 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt |
34345263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 18481324 - 18481254
Alignment:
| Q |
16 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat |
87 |
Q |
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| T |
18481324 |
ataaaaaatgccacacaaggatggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat |
18481254 |
T |
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