View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_99 (Length: 227)
Name: NF17152_low_99
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_99 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 52967530 - 52967314
Alignment:
| Q |
11 |
gagagaagaaggttttagactttaatgaagtcaaaatgttgatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagtatag |
110 |
Q |
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| T |
52967530 |
gagagaagaaggttttagactttaatgaagtcaaaatgtttatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagtaaaagtatag |
52967431 |
T |
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| Q |
111 |
ttcaaggaggtttgtgaagtgttttaggagaatgagccaaacttgaggaggtgaagatggcttttgatgacaacaaagatggttttgtttgatgcatagg |
210 |
Q |
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| T |
52967430 |
ttcaaggaggtttgtgaagtgttttaggagaatgagccaaacttgaggaggtgaagatggcttttgatgacaacaaagatggttttgtttgatgcatagg |
52967331 |
T |
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| Q |
211 |
agttgcaaagagttctt |
227 |
Q |
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| T |
52967330 |
agttgcaaagagttctt |
52967314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 52971405 - 52971203
Alignment:
| Q |
35 |
atgaagtcaaaatgttgatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagtatagttc-aaggaggtttgtgaagtgtt |
133 |
Q |
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| T |
52971405 |
atgaagtgaaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtt |
52971306 |
T |
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| Q |
134 |
ttaggagaatgagccaaactt-gaggaggtgaagatggc---------ttttgatgacaacaaagatggttttgtttgatgcataggagttgcaaagagt |
223 |
Q |
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| T |
52971305 |
tgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggtttt-attgatgcaaaggagttgcaaagagt |
52971207 |
T |
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| Q |
224 |
tctt |
227 |
Q |
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| T |
52971206 |
tctt |
52971203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 2855799 - 2855922
Alignment:
| Q |
58 |
aatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagccaaacttg- |
155 |
Q |
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| T |
2855799 |
aatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttgg |
2855898 |
T |
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| Q |
156 |
aggaggtgaagatggcttttgatg |
179 |
Q |
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| T |
2855899 |
aggaagtgaagatggcttttgatg |
2855922 |
T |
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