View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_high_3 (Length: 462)
Name: NF17153_high_3
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 31664410 - 31663976
Alignment:
| Q |
18 |
aaaccctcgatccaaacacagcttaggattaaaatggaagaggttcagttaaatttttctatctttcttgaagaatctatatcgaaatcccgaatcatcc |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31664410 |
aaaccctcaatccaaacacagcttaggattaaaatggaagaggttcagttaaatttttctatctttcttgaagaatctatatc------ccgaatcatcc |
31664317 |
T |
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| Q |
118 |
ctagataatatataatttctactccaattcctactaataataaacttctttgaaagaaaagtaaaaagggttattattagtacctcttttggggcgatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664316 |
ctagataatatataatttctactccaattcctactaataataaacttctttgaaagaaaagtaaaaagggttattattagtacctcttttggggcgatgg |
31664217 |
T |
|
| Q |
218 |
tgtgcgatgcttgccggaaaaaggtaacgtccttacccagatactctcatggaggcagcggacacgtcttgggattgagaacaaaataaagaattggatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664216 |
tgtgcgatgcttgccggaaaaaggtaacgtccttacccagatactctcatggaggcagcggacacgtcttgggattgagaacaaaataaagaattggatt |
31664117 |
T |
|
| Q |
318 |
gtaaaacgtgtttcaatctcacagaaattgcattatatctatccttcgtttgcgaatcgtcagttacagaaat------ccaatagtagcgagcaaatgc |
411 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |
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| T |
31664116 |
gtaaaacgtgtttcaatctcacagaaattgcattctatctatccttcgtttgcgaatcgtaagttacagaaatccaaatccaatagtaacgagcaaatgc |
31664017 |
T |
|
| Q |
412 |
accgtgtcgtagagcagagaacagcgatcgtcgaacctttg |
452 |
Q |
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| T |
31664016 |
accgtgtcgtagagcagagaacagcgatcgtcgaacctttg |
31663976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 31931986 - 31932420
Alignment:
| Q |
18 |
aaaccctcgatccaaacacagcttaggattaaaatggaagaggttcagttaaatttttctatctttcttgaagaatctatatcgaaatcccgaatcatcc |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31931986 |
aaaccctcaatccaaacacagcttaggattaaaatggaagaggttcagttaaatttttctatctttcttgaagaatctatatc------ccgaatcatcc |
31932079 |
T |
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| Q |
118 |
ctagataatatataatttctactccaattcctactaataataaacttctttgaaagaaaagtaaaaagggttattattagtacctcttttggggcgatgg |
217 |
Q |
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| T |
31932080 |
ctagataatatataatttctactccaattcctactaataataaacttctttgaaagaaaagtaaaaagggttattattagtacctcttttggggcgatgg |
31932179 |
T |
|
| Q |
218 |
tgtgcgatgcttgccggaaaaaggtaacgtccttacccagatactctcatggaggcagcggacacgtcttgggattgagaacaaaataaagaattggatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31932180 |
tgtgcgatgcttgccggaaaaaggtaacgtccttacccagatactctcatggaggcagcggacacgtcttgggattgagaacaaaataaagaattggatt |
31932279 |
T |
|
| Q |
318 |
gtaaaacgtgtttcaatctcacagaaattgcattatatctatccttcgtttgcgaatcgtcagttacag------aaatccaatagtagcgagcaaatgc |
411 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
31932280 |
gtaaaacgtgtttcaatctcacagaaattgcattctatctatccttcgtttgcgaatcgtaagttacagaaatccaaatccaatagtaacgagcaaatgc |
31932379 |
T |
|
| Q |
412 |
accgtgtcgtagagcagagaacagcgatcgtcgaacctttg |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31932380 |
accgtgtcgtagagcagagaacagcgatcgtcgaacctttg |
31932420 |
T |
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