View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_10 (Length: 260)
Name: NF17153_low_10
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_10 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 26619718 - 26619472
Alignment:
| Q |
6 |
ttgcagcagctactggtgagcttcattggcttctttatcttctcatagaccttgacattgcttgcatcaaaatgcatgtgttaataatcaaagttcccta |
105 |
Q |
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| T |
26619718 |
ttgcagcagctactggtgagcttcattggcttctttatcttctcatagaccttgacactgcttgcaacaaaatgcatgtgttaataatcaaagttcccta |
26619619 |
T |
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| Q |
106 |
catgttgcagccaaccttgtgttccatgaacgtactaagcattttgatatagattgccacattgtcagagagaaatggttaagtcatgaaacttcttcca |
205 |
Q |
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| T |
26619618 |
catgttgcagccaaccttgtgttccatgaacgtactaagcatttggatatagattgccacattgacagagagaaatggttaagtcatgaaacttcttcca |
26619519 |
T |
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| Q |
206 |
gtttcttccaaagaccaaattgttgatttcttcactaagtctctgct |
252 |
Q |
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| T |
26619518 |
gtttcttccaaagaccaaattgttgatttcttcactaagtctctgct |
26619472 |
T |
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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 90400 - 90458
Alignment:
| Q |
121 |
cttgtgttccatgaacgtactaagcattttgatatagattgccacattgtcagagagaa |
179 |
Q |
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| T |
90400 |
cttgtgttccatgaacgtaccaagcacttagaaatagattgtcatattgtaagagagaa |
90458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 22645746 - 22645794
Alignment:
| Q |
192 |
tgaaacttcttccagtttcttccaaagaccaaattgttgatttcttcac |
240 |
Q |
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| T |
22645746 |
tgaaacttctcccagtttcttctcaagatcaaattgctgatttcttcac |
22645794 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 23682798 - 23682842
Alignment:
| Q |
4 |
tcttgcagcagctactggtgagcttcattggcttctttatcttct |
48 |
Q |
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| T |
23682798 |
tcttgcagcagctacttgtgaactgcagtggcttctttatcttct |
23682842 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 37736941 - 37736897
Alignment:
| Q |
4 |
tcttgcagcagctactggtgagcttcattggcttctttatcttct |
48 |
Q |
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| T |
37736941 |
tcttgcagcagctacttgtgaactgcagtggcttctttatcttct |
37736897 |
T |
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