View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_12 (Length: 249)
Name: NF17153_low_12
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_12 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 8421195 - 8421309
Alignment:
| Q |
125 |
attgtaactattcttgtaaaagacattggcttcccttctattactcaatccttccctctattattaaaaatagaaggggtatcatttaaagagaattaat |
224 |
Q |
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| T |
8421195 |
attgtaactattcttgtaaaagacattggcttcccttctattactcaatccttccctctattattaataatagaaggggtatcatttaaagagaattaat |
8421294 |
T |
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| Q |
225 |
aaaagtgtagaatta |
239 |
Q |
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| T |
8421295 |
aaaagtgtagaatta |
8421309 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 13863118 - 13863213
Alignment:
| Q |
2 |
tgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggttcttcaagttgaaaagaaa |
98 |
Q |
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| T |
13863118 |
tgtcaaactccttttaatacactcccatacataaagccacgtcacccctttt-gatagtggtctaccgaatcacctattcttcaagttgaaaagaaa |
13863213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24373838 - 24373937
Alignment:
| Q |
1 |
ctgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggttcttcaagttgaaaagaaata |
100 |
Q |
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| T |
24373838 |
ctgtcaaactccttttaacacactcccatatatgaagccacgtcacccctttttgatagtggtctaccgaatcaccggttcttcaagttgaaaagaaata |
24373937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 26011495 - 26011594
Alignment:
| Q |
1 |
ctgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggttcttcaagttgaaaagaaata |
100 |
Q |
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| T |
26011495 |
ctgtcaaactctttttaacacactcccatatatgaagccacgtcacccttttttgatagtggtctaccgaatcacccgttcttcaagttgaaaagaaata |
26011594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 24377539 - 24377586
Alignment:
| Q |
6 |
aaactctttttaacacactccc--atatatgaagccacatcacccctt |
51 |
Q |
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| T |
24377539 |
aaactccttttaacacactcccatatatatgaagccacgtcacccctt |
24377586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10664 - 10620
Alignment:
| Q |
1 |
ctgtcaaactctttttaacacactcccatatatgaagccacatca |
45 |
Q |
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| T |
10664 |
ctgtcaaactctttttaacacaccctcttacatgaagccacatca |
10620 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 56107001 - 56107045
Alignment:
| Q |
1 |
ctgtcaaactctttttaacacactcccatatatgaagccacatca |
45 |
Q |
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| T |
56107001 |
ctgtcaaactctttttaacacaccctcttacatgaagccacatca |
56107045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 56111800 - 56111756
Alignment:
| Q |
1 |
ctgtcaaactctttttaacacactcccatatatgaagccacatca |
45 |
Q |
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| T |
56111800 |
ctgtcaaactctttttaacacaccctcttacatgaagccacatca |
56111756 |
T |
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