View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_16 (Length: 213)
Name: NF17153_low_16
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 28947907 - 28948087
Alignment:
| Q |
19 |
aggattacaaaaggaatgcattcatggaggcagatatacagtgttcaaatgccatacattctatggaaaagaggctgagggctgcttgtaatgcttctga |
118 |
Q |
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| T |
28947907 |
aggattacaaaaggaatgcattcatggaggcagatatacagtgttcaaatgccatacattctatggaaaagaggctgagggctgcttgtaatgcttctga |
28948006 |
T |
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| Q |
119 |
tgctagggttgataatgttgcaaaggtaatatgttgcttttgagtgatgcatttattcttttcattccttcattctttcat |
199 |
Q |
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| T |
28948007 |
tgctagggttgataatgttgcaaaggtaatatgttgcttttaagtgatgcatttattcttttcattccttcattctttcat |
28948087 |
T |
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Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 34813262 - 34813442
Alignment:
| Q |
19 |
aggattacaaaaggaatgcattcatggaggcagatatacagtgttcaaatgccatacattctatggaaaagaggctgagggctgcttgtaatgcttctga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813262 |
aggattacaaaaggaatgcattcatggaggcagatatacagtgttcaaatgccatacattctatggaaaagaggctgagggctgcttgtaatgcttctga |
34813361 |
T |
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| Q |
119 |
tgctagggttgataatgttgcaaaggtaatatgttgcttttgagtgatgcatttattcttttcattccttcattctttcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
34813362 |
tgctagggttgataatgttgcaaaggtaatatgttgcttttaagtgatgcttttattcttttcattccttcattctttcat |
34813442 |
T |
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