View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_2 (Length: 632)
Name: NF17153_low_2
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 177 - 616
Target Start/End: Complemental strand, 8958490 - 8958052
Alignment:
| Q |
177 |
gagatttaataaatcaaaataatctagaaactttgttttaaaaacgaaatggaaaaagggaaatgtttattgttatgtgttgtagagtaataatgaacat |
276 |
Q |
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| T |
8958490 |
gagatttaataaatcaaaataatctagaaactttgttttaaaaacgaaatggaaaaaggaaaatgtttattgttatgtgttgtagagtaataatgaacat |
8958391 |
T |
|
| Q |
277 |
agcacatatttatagaagtttatatttatatgggtcgtggaccacaattatgtgttgatgtattgtagaccataaaaatcttgcatttgagtgatacata |
376 |
Q |
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| T |
8958390 |
aacacatatttatagaagtttatatttatatgggtcgtggaccacaa-tatatgtcgatgcattgtagaccacaaaaatcttgcatttgagtgatacata |
8958292 |
T |
|
| Q |
377 |
ttttagatccgaaactttaacaagca-nnnnnnnnatcatagaattcaaattgtgtcgaatccctaaagatcatgtttcattttcaaacggtctccatca |
475 |
Q |
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| T |
8958291 |
ttctagatccgaaactttaacaagcacttttttttattatagaattcgaattgtgtcgaatccc-aaagatcatgtttcattttcaaacggtctccgtta |
8958193 |
T |
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| Q |
476 |
ctatattggcatatttcagattctataaatcaaacacgtaaaatattggttcaatcgtatagagtttgaaccaaaaatgcaatggaaaatggtgtttatg |
575 |
Q |
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| T |
8958192 |
ttatattgacatatttcagattctataaatcaaacacgtaaaatattggttcaattgtatagagtctaaaccaaaaatgcaatggaaaatggtgtttatg |
8958093 |
T |
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| Q |
576 |
tatgtaatctaacatcgatcaatacatgtactctaacatac |
616 |
Q |
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| T |
8958092 |
tatgtaatctaacatcgatcaatacatgtactctaacatac |
8958052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 6 - 464
Target Start/End: Complemental strand, 7997723 - 7997270
Alignment:
| Q |
6 |
agtgagatgaagataaaccaaacaaaccaaattatggaagtttgtgtgggtcatgcaccacatatagcgtnnnnnnnnnnnnnnnnnctatatatacata |
105 |
Q |
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| T |
7997723 |
agtgaaatgaagataaatcaaacaaaccaaattatggaagtttgtgtgggtcatgcaccacatatagcgtaaaaaaaaa--------ctatatatacata |
7997632 |
T |
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| Q |
106 |
taagaaatctcttccaccaatattgcttgtcatttagtttttctgtattttgaaaaactcaaattgtatttgagatttaataaatcaaaataatctagaa |
205 |
Q |
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| T |
7997631 |
taagaaatctcttccaccaatattgcttgtcatttagtttttctgtattttgaaaaactcaaattatatttgagatttaataaatcaaaataatctagaa |
7997532 |
T |
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| Q |
206 |
actttgttttaaaaacgaaatggaaaaagggaaatgtttattgttatgtgttgtagagtaataatgaacatagcacatatttatagaagtttatatttat |
305 |
Q |
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| T |
7997531 |
actttgttttaaaaacgaaatggaaaaaggaaaatgtttattgttatgtgttgtagagtaataatgaacataacacatatttatagaaatttatatttat |
7997432 |
T |
|
| Q |
306 |
atgggtcgtggaccacaattatgtgttgatgtattgtagaccataaaaatcttgcatttgagtgatacatattttagatccgaaactttaacaagca--- |
402 |
Q |
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| T |
7997431 |
atgggtcgtggaccacaa-tatatatcgatgcattgtagaccacaaaattcttatatttgagtgatacatattttagatccgaaactttaacaagcattt |
7997333 |
T |
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| Q |
403 |
-nnnnnnnnatcatagaattcaaattgtgtcgaatccctaaagatcatgtttcattttcaaac |
464 |
Q |
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| T |
7997332 |
tttttttctattatagaattcgaattgtgtcgaatccccaaagatcatgtttcattttcaaac |
7997270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 530 - 609
Target Start/End: Complemental strand, 7997091 - 7997012
Alignment:
| Q |
530 |
tcgtatagagtttgaaccaaaaatgcaatggaaaatggtgtttatgtatgtaatctaacatcgatcaatacatgtactct |
609 |
Q |
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| T |
7997091 |
tcgtatagagtctgaaccaaaaatgcaatggaaaatggtgtttatgtatgtaatctaacatcgatcaatacatgtactct |
7997012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 31716956 - 31717007
Alignment:
| Q |
478 |
atattggcatatttcagattctataaatcaaacacgtaaaatattggttcaa |
529 |
Q |
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| T |
31716956 |
atattgacatatttcaaattctataaatcaaacacataaaataatggttcaa |
31717007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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