View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_5 (Length: 390)
Name: NF17153_low_5
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 41464124 - 41464490
Alignment:
| Q |
18 |
ttatagtcgtttatgtttagaaatgttgataatgttcgaccaattgtaaaattttactctcaatcatatgccttgttcccatttcagttaacaagtcttt |
117 |
Q |
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| T |
41464124 |
ttatagtcgtttatgtttagaaatgttgataatgttcgaccaattgtaaaattttactctcaatcatatgccttgctctcatttcagttaacaagtcttt |
41464223 |
T |
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| Q |
118 |
gatggatccacctcttcctatcttttataagaagtgtaagcaagacttattctaacactttatc-taatccctcttttttattggataaaattcatattc |
216 |
Q |
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| T |
41464224 |
gatggatccacctcttcctatcttttataagaagtgtaagcaagacttattctaacactctatcttaatccctcttttttattggatacaattcatattt |
41464323 |
T |
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| Q |
217 |
ccnnnnnnnaaaaatggatttcatataaaaatagtgagacactataaattttacatatnnnnnnntgaatatt--nnnnnnngcgtcgaagtgaacgttg |
314 |
Q |
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| T |
41464324 |
cctttttttttaaatggatttcatataaaaatagtgagacactataaattttacatataaaaaaatgaatattagagaaagagcgtcaaagtaaacgttg |
41464423 |
T |
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| Q |
315 |
ataccataaaattacactccttatgtttaaaca-cctcaaacatccatctagtgccctaagttcatc |
380 |
Q |
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| T |
41464424 |
ataccataaaattgcactccttatgtttaaacaccctcaaacatccatctagtgccctaggttcatc |
41464490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 41458856 - 41459028
Alignment:
| Q |
56 |
accaattgtaaaattttactctcaatcat----atgccttgttcccatttcagttaacaagtctttgatggatcc--------acctcttcctatctttt |
143 |
Q |
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| T |
41458856 |
accaattgtaaaattttactctcaatcatttttatgccttgttctcctttcacttaacaagtcttcgatggatccccacatccacctcttcctatctttt |
41458955 |
T |
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| Q |
144 |
ataagaagtgtaagcaagacttattctaacactttatct-aatccctcttttttattggataaaattcatatt |
215 |
Q |
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| T |
41458956 |
ataagaagtgtaagcaagactcattctaacactctatctcaatccctcctttttattggatacaattcatatt |
41459028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 41459507 - 41459587
Alignment:
| Q |
298 |
cgtcgaagtgaacgttgataccataaaattacactccttatgtttaaaca-cctcaaacatccatctagtgccctaagttcatc |
380 |
Q |
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| T |
41459507 |
cgtcaaagtgaacgttgataccataaaattgtactcc---tgtttaaacaccctcagacatccatctagtgctctaggttcatc |
41459587 |
T |
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