View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_6 (Length: 366)
Name: NF17153_low_6
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 205 - 358
Target Start/End: Complemental strand, 42495346 - 42495193
Alignment:
| Q |
205 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
304 |
Q |
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| T |
42495346 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
42495247 |
T |
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| Q |
305 |
tttaaagattagtataattgccatctcaattatttggtttctttttcctatgat |
358 |
Q |
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| T |
42495246 |
tttaaagattagtataattgccatctcaattatttggtttctttttcctatgat |
42495193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 42493217 - 42493015
Alignment:
| Q |
113 |
taatctatacctaacatcttgactcaatttcttggggactgataaaaaatcgagttggactttagaaggcgtgtttgatcctgaaacatggcttctaaag |
212 |
Q |
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| T |
42493217 |
taatccatacctaacatcttgactcaatttcttaggaactgataaaaaaacgtgttggacttgagaaggcgtgtttcatcttgaaagacggcttctaaag |
42493118 |
T |
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| Q |
213 |
gcacatacatgtataaatgatcataattatatttcaagataa-----aaaatga-ttccaaagtctaacacattttttgatcagcccccaaaattttatt |
306 |
Q |
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| T |
42493117 |
gcacatacatgtataaatgattataattatatttcaagaaaagatgaaaaatgacttccaaagtctaacgcatttttt-attagcccccaaaattttatt |
42493019 |
T |
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| Q |
307 |
taaa |
310 |
Q |
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|||| |
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| T |
42493018 |
taaa |
42493015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 42495441 - 42495341
Alignment:
| Q |
15 |
attctatttgattgcattacaggggggctgaaatgaaggttcactttataaaatgcttagagaagcctaggaaagtaggtgaaaatgataggtcattcta |
114 |
Q |
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| T |
42495441 |
attctatttgattgcattacagggggcctgaaatgaaggttcactttataaaatgcttagagaagcctaggaaagtaggtgaaaatgataagtcattcta |
42495342 |
T |
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| Q |
115 |
a |
115 |
Q |
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| T |
42495341 |
a |
42495341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 42493281 - 42493233
Alignment:
| Q |
81 |
ctaggaaagtaggtgaaaatgataggtcattctaatctatacctaacat |
129 |
Q |
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| T |
42493281 |
ctagaaaagtaggtgaaaatgataggtcattctaatccatacctaacat |
42493233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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